The Identification and Characterization of the PeGRF Gene Family in Populus euphratica Oliv. Heteromorphic Leaves Provide a Theoretical Basis for the Functional Study of PeGRF9

<i>Populus euphratica</i> Oliv. typically has four kinds of heteromorphic leaves: linear (Li), lanceolate (La), ovate (Ov) and broad ovate (Bo). Heteromorphic leaves help <i>P. euphratica</i> adapt to extreme desert environments and further contribute to protection against land desertification in Northwest China. In the authors' previous research, growth-regulating factors (GRFs) were speculated to be related to the development of <i>P. euphratica</i> heteromorphic leaves via multi-omics integrated analysis. However, the genomic features and biological role of the <i>P. euphratica GRF</i> gene family in heteromorphic leaves are still unclear. In this study, 19 <i>PeGRF</i> genes were genome-widely identified and characterized in <i>P. euphratica</i>, and their physicochemical properties, gene structure and phylogenetic evolution were analyzed. An analysis of the research showed that <i>PeGRFs</i> were unevenly distributed on 11 chromosomes and that PeGRF proteins contained conserved motif 1 (WRC) and motif 2 (QLQ). Moreover, 19, 15, 19 and 22 <i>GRFs</i> were identified in <i>Populus deltoides</i> Marshall, <i>Populus pruinosa</i> Schrenk, <i>Salix sinopurpurea</i> C. Wang et C. Y. Yang and <i>Salix suchowensis</i> W. C. Cheng, respectively. A collinearity analysis showed that the <i>PeGRF</i> family evolved slowly within Populus species. A phylogenetic tree of the GRF family was also constructed, and GRFs were divided into four subfamilies. A large number of cis-acting elements were related to plant growth and development, plant hormone response and stress response on the promoter of <i>PeGRFs</i>. The expression pattern of <i>PeGRFs</i> showed significant up-regulation in broad leaves (Ov and Bo) compared with narrow leaves (Li and La). In combination with the predicted gene regulatory network, <i>PeGRF9</i> (<i>PeuTF06G01147.1</i>) may have an important contribution to the leaf shape development of <i>P. euphratica.</i> The heterologous expression of <i>PeGRF9</i> in wild-type plants (Col-0) of <i>Arabidopsis thaliana</i> (L.) Heynh was also studied, showing a significant increase in the leaf area of overexpressing plants compared with the wild type. Nineteen <i>PeGRF</i> gene members were identified and characterized in <i>P. euphratica</i>, and a comparison of the genomic analysis of Populus GRF members revealed their evolutionary features. The further overexpression of <i>PeGRF9</i> in <i>A. thaliana</i> revealed its biological role in the heteromorphic leaves of <i>P. euphratica.</i> This study not only provides new insights into the evolution and function of PeGRFs in <i>P. euphratica</i> heteromorphic leaves but also helps in an understanding of the adaptive evolution of <i>P. euphratica</i> in drought desert environments.

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Journal
International Journal of Molecular Sciences
Published
2024-12-25
DOI
https://doi.org/10.3390/ijms26010066
Citations
3
Primary Topic
Plant Molecular Biology Research
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article
Field-Weighted Citation Impact
1.80

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article

The Identification and Characterization of the PeGRF Gene Family in Populus euphratica Oliv. Heteromorphic Leaves Provide a Theoretical Basis for the Functional Study of PeGRF9

Yanzhuang Wang, Jianhao Sun, Xiaona Lu, Peipei Jiao et al.
3 citations
International Journal of Molecular Sciences
Plant Molecular Biology Research
1.80
article

The Identification and Characterization of the PeGRF Gene Family in Populus euphratica Oliv. Heteromorphic Leaves Provide a Theoretical Basis for the Functional Study of PeGRF9

Yanzhuang Wang, Jianhao Sun, Xiaona Lu, Peipei Jiao, Chen Qiu, Zhihua Wu, Zhijun Li, Yongqiang Chen, Yang Yuan, Mingyu Jia, Tongrui Song, Hongyan Jin, Jing Li
article en
3 citations

Abstract

<i>Populus euphratica</i> Oliv. typically has four kinds of heteromorphic leaves: linear (Li), lanceolate (La), ovate (Ov) and broad ovate (Bo). Heteromorphic leaves help <i>P. euphratica</i> adapt to extreme desert environments and further contribute to protection against land desertification in Northwest China. In the authors' previous research, growth-regulating factors (GRFs) were speculated to be related to the development of <i>P. euphratica</i> heteromorphic leaves via multi-omics integrated analysis. However, the genomic features and biological role of the <i>P. euphratica GRF</i> gene family in heteromorphic leaves are still unclear. In this study, 19 <i>PeGRF</i> genes were genome-widely identified and characterized in <i>P. euphratica</i>, and their physicochemical properties, gene structure and phylogenetic evolution were analyzed. An analysis of the research showed that <i>PeGRFs</i> were unevenly distributed on 11 chromosomes and that PeGRF proteins contained conserved motif 1 (WRC) and motif 2 (QLQ). Moreover, 19, 15, 19 and 22 <i>GRFs</i> were identified in <i>Populus deltoides</i> Marshall, <i>Populus pruinosa</i> Schrenk, <i>Salix sinopurpurea</i> C. Wang et C. Y. Yang and <i>Salix suchowensis</i> W. C. Cheng, respectively. A collinearity analysis showed that the <i>PeGRF</i> family evolved slowly within Populus species. A phylogenetic tree of the GRF family was also constructed, and GRFs were divided into four subfamilies. A large number of cis-acting elements were related to plant growth and development, plant hormone response and stress response on the promoter of <i>PeGRFs</i>. The expression pattern of <i>PeGRFs</i> showed significant up-regulation in broad leaves (Ov and Bo) compared with narrow leaves (Li and La). In combination with the predicted gene regulatory network, <i>PeGRF9</i> (<i>PeuTF06G01147.1</i>) may have an important contribution to the leaf shape development of <i>P. euphratica.</i> The heterologous expression of <i>PeGRF9</i> in wild-type plants (Col-0) of <i>Arabidopsis thaliana</i> (L.) Heynh was also studied, showing a significant increase in the leaf area of overexpressing plants compared with the wild type. Nineteen <i>PeGRF</i> gene members were identified and characterized in <i>P. euphratica</i>, and a comparison of the genomic analysis of Populus GRF members revealed their evolutionary features. The further overexpression of <i>PeGRF9</i> in <i>A. thaliana</i> revealed its biological role in the heteromorphic leaves of <i>P. euphratica.</i> This study not only provides new insights into the evolution and function of PeGRFs in <i>P. euphratica</i> heteromorphic leaves but also helps in an understanding of the adaptive evolution of <i>P. euphratica</i> in drought desert environments.

International Journal of Molecular SciencesVol. 26(1)
Zhejiang Normal University (CN), Huazhong Agricultural University (CN), Xinjiang Production and Construction Corps (CN), Tarim University (CN)
National Natural Science Foundation of China
Life in Land
Openalex Percentile: Top 12%
Plant Molecular Biology Research
1.80
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