Human-Validated Neural Networks for Precise Amastigote Categorization and Quantification to Accelerate Drug Discovery in Leishmaniasis

Leishmaniases present a significant global health challenge with limited and often inadequate treatment options available. Traditional microscopic methods for detecting Leishmania amastigotes are time-consuming and error-prone, highlighting the need for automated approaches. This study aimed to implement and validate the YOLOv8 deep learning model for real-time detection, quantification, and categorization of Leishmania amastigotes to enhance drug screening assays. YOLOv8 was trained on 470 images from two microscopes, classifying them into categories such as "infected cells," "intracellular amastigotes," "uninfected cells," and "edge cells." The model's performance was compared to human operators using Pearson and Spearman correlation analyses. YOLOv8 achieved strong performance in detecting "infected cells" (AUC = 0.934) and "intracellular amastigotes" (AUC = 0.846). However, challenges remained in differentiating extracellular amastigotes from background noise (AUC = 0.672). Despite these challenges, the YOLOv8 model effectively minimized human variability in drug screening, providing a reliable and efficient tool for the quantification and categorization of Leishmania amastigotes in drug discovery efforts. While further refinements are required to resolve misclassification issues, the model demonstrates significant potential in enhancing both accuracy and throughput in preclinical assays.

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Publication Details

Journal
ACS Omega
Published
2024-12-24
DOI
https://doi.org/10.1021/acsomega.4c08735
Citations
1
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
0.36

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article

Human-Validated Neural Networks for Precise Amastigote Categorization and Quantification to Accelerate Drug Discovery in Leishmaniasis

Carla Cardozo Pinto de Arruda, Yasmin Silva Rizk, Fernanda da Silva, Rafael Francisco Rosalem et al.
1 citations
ACS Omega
Computational Drug Discovery Methods
0.36
article

Human-Validated Neural Networks for Precise Amastigote Categorization and Quantification to Accelerate Drug Discovery in Leishmaniasis

Carla Cardozo Pinto de Arruda, Yasmin Silva Rizk, Fernanda da Silva, Rafael Francisco Rosalem, Carlos Alexandre Carollo, Andrey Gaspar Sorrilha-Rodrigues, João Lucas Aparecido Rocha Paes
article en
1 citations

Abstract

Leishmaniases present a significant global health challenge with limited and often inadequate treatment options available. Traditional microscopic methods for detecting Leishmania amastigotes are time-consuming and error-prone, highlighting the need for automated approaches. This study aimed to implement and validate the YOLOv8 deep learning model for real-time detection, quantification, and categorization of Leishmania amastigotes to enhance drug screening assays. YOLOv8 was trained on 470 images from two microscopes, classifying them into categories such as "infected cells," "intracellular amastigotes," "uninfected cells," and "edge cells." The model's performance was compared to human operators using Pearson and Spearman correlation analyses. YOLOv8 achieved strong performance in detecting "infected cells" (AUC = 0.934) and "intracellular amastigotes" (AUC = 0.846). However, challenges remained in differentiating extracellular amastigotes from background noise (AUC = 0.672). Despite these challenges, the YOLOv8 model effectively minimized human variability in drug screening, providing a reliable and efficient tool for the quantification and categorization of Leishmania amastigotes in drug discovery efforts. While further refinements are required to resolve misclassification issues, the model demonstrates significant potential in enhancing both accuracy and throughput in preclinical assays.

ACS OmegaVol. 10(1)
Universidade Federal de Mato Grosso do Sul (BR), IONICS Mass Spectrometry (Canada) (CA), General Electric (Norway) (NO), Institute of Parasitology (CZ)
Coordenação de Aperfeiçoamento de Pessoal de Nível Superior, Conselho Nacional de Desenvolvimento Científico e Tecnológico, Fundação de Apoio ao Desenvolvimento do Ensino, Ciência e Tecnologia do Estado de Mato Grosso do Sul, Universidade Federal de Mato Grosso do Sul
Zero hunger
Openalex Percentile: Top 33%
Computational Drug Discovery Methods
0.36
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