Sulfur Analogs of the Core Formose Cycle: A Free Energy Map

Using computational methods, we examine if the presence of H<sub>2</sub>S can tame the unruly formose reaction by generating a free energy map of the reaction thermodynamics and kinetics of sulfur analogs within the core cycle. With mercaptoaldehyde as the linchpin C<sub>2</sub> species, and feeding the cycle with CH<sub>2</sub>O, selected aldol additions and enolizations are kinetically more favorable. Thione formation is thermodynamically less favored compared to aldehydes and ketones, but all these species can be connected by enolization reactions. In some sulfur analogs, the retroaldol transformation of a C4 species back into linchpin species is thermodynamically favorable, and we have found one route incorporating where incorporating sulfur selects for a specific pathway over others. However, as CH<sub>2</sub>O diminishes, the aldol addition of larger species is less favorable for the sulfur analogs. Our results also suggest that competing Cannizzaro side reactions are kinetically less favored and thermodynamically disfavored when H<sub>2</sub>S is abundant.

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Publication Details

Journal
Life
Published
2024-12-24
DOI
https://doi.org/10.3390/life15010001
Citations
2
Primary Topic
Microbial Metabolic Engineering and Bioproduction
Type
article
Field-Weighted Citation Impact
0.47

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article

Sulfur Analogs of the Core Formose Cycle: A Free Energy Map

Manuel Pena, Jeremy Kua, Samantha N. Cotter, John Leca
2 citations
Life
Microbial Metabolic Engineering and Bioproduction
0.47
article

Sulfur Analogs of the Core Formose Cycle: A Free Energy Map

Manuel Pena, Jeremy Kua, Samantha N. Cotter, John Leca
article en
2 citations

Abstract

Using computational methods, we examine if the presence of H<sub>2</sub>S can tame the unruly formose reaction by generating a free energy map of the reaction thermodynamics and kinetics of sulfur analogs within the core cycle. With mercaptoaldehyde as the linchpin C<sub>2</sub> species, and feeding the cycle with CH<sub>2</sub>O, selected aldol additions and enolizations are kinetically more favorable. Thione formation is thermodynamically less favored compared to aldehydes and ketones, but all these species can be connected by enolization reactions. In some sulfur analogs, the retroaldol transformation of a C4 species back into linchpin species is thermodynamically favorable, and we have found one route incorporating where incorporating sulfur selects for a specific pathway over others. However, as CH<sub>2</sub>O diminishes, the aldol addition of larger species is less favorable for the sulfur analogs. Our results also suggest that competing Cannizzaro side reactions are kinetically less favored and thermodynamically disfavored when H<sub>2</sub>S is abundant.

LifeVol. 15(1)
University of San Diego (US)
National Aeronautics and Space Administration, Nuclear Safety and Security Commission
Affordable and clean energy
Openalex Percentile: Top 33%
Microbial Metabolic Engineering and Bioproduction
0.47
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