A chromosome-level genome assembly of Serangium japonicum Chapin, 1940 (Coleoptera: Coccinellidae)

Serangium japonicum (Coleoptera; Coccinellidae) plays a crucial role as a predatory coccinellid in ecosystems, exhibiting adept predation on diverse whitefly species and effectively regulating their population dynamics. Nonetheless, the absence of high-quality genomic data has hindered our comprehension of the molecular mechanisms underlying this predatory beetle. This study performed genome sequencing of S. japonicum using the PacBio HiFi long reads and Hi-C data. The genome spans 433.74 Mb, which includes 104 contigs and 17 scaffolds, with a contig N50 size of 11.44 Mb and a scaffold N50 size of 42.67 Mb. A substantial portion of the genome, totaling 433.04 Mb (99.84%), was anchored to 10 chromosomes. BUSCO analysis demonstrates a high genomic completeness of 97.8% (n = 1,376), comprising 97.3% single-copy genes and 0.5% duplicated genes. The genome includes 54.66% (237.06 Mb) repetitive elements and 12,299 predicted protein-coding genes. The chromosome-level genome of S. japonicum offers important genomic insights that enhance our understanding of the evolution and ecology of the Coccinellidae family.

Authors

Institutions

Publication Details

Journal
Scientific Data
Published
2024-12-23
DOI
https://doi.org/10.1038/s41597-024-04197-w
Citations
1
Primary Topic
Insect Resistance and Genetics
Type
article
Field-Weighted Citation Impact
0.23

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

A chromosome-level genome assembly of Serangium japonicum Chapin, 1940 (Coleoptera: Coccinellidae)

Zhengling Liu, Jianfeng Jin, Chuyang Huang, Hongming Li et al.
1 citations
Scientific Data
Insect Resistance and Genetics
0.23
article

A chromosome-level genome assembly of Serangium japonicum Chapin, 1940 (Coleoptera: Coccinellidae)

Zhengling Liu, Jianfeng Jin, Chuyang Huang, Hongming Li, Yonghui Xie, Xingmin Wang, Maolin Ye, Kaide Ning
article en
1 citations

Abstract

Serangium japonicum (Coleoptera; Coccinellidae) plays a crucial role as a predatory coccinellid in ecosystems, exhibiting adept predation on diverse whitefly species and effectively regulating their population dynamics. Nonetheless, the absence of high-quality genomic data has hindered our comprehension of the molecular mechanisms underlying this predatory beetle. This study performed genome sequencing of S. japonicum using the PacBio HiFi long reads and Hi-C data. The genome spans 433.74 Mb, which includes 104 contigs and 17 scaffolds, with a contig N50 size of 11.44 Mb and a scaffold N50 size of 42.67 Mb. A substantial portion of the genome, totaling 433.04 Mb (99.84%), was anchored to 10 chromosomes. BUSCO analysis demonstrates a high genomic completeness of 97.8% (n = 1,376), comprising 97.3% single-copy genes and 0.5% duplicated genes. The genome includes 54.66% (237.06 Mb) repetitive elements and 12,299 predicted protein-coding genes. The chromosome-level genome of S. japonicum offers important genomic insights that enhance our understanding of the evolution and ecology of the Coccinellidae family.

Scientific DataVol. 11(1)
South China Agricultural University (CN), Xinyang Normal University (CN)
National Natural Science Foundation of China, China National Tobacco Corporation
Openalex Percentile: Top 40%
Insect Resistance and Genetics
0.23
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.