The first engkabang jantong (Rubroshorea macrophylla) genome survey data

The engkabang jantong (<i>Rubroshorea macrophylla</i>) is one of the most indispensable tree species for reforestation due to its high survival rate and rapid growth rate. Due to relatively low genetic interest of this tree species, its genomic landscape has since faced scarcity, impeding our further elucidation on genes that are involved in expressing its aforementioned superior properties. In this study, we performed genome survey and microsatellite analysis of engkabang jantong. Based on the results, the estimated genome size of this species is 312,071,515 bp with 18.43 % repeated sequences and 1.16 % heterozygosity. BUSCO analysis unearthed that 83.5 % of the contigs are single-copy genes whereas 12.7 % of them are duplicated. Only 2.8 % and 1 % of them are fragmented and missing respectively. The short-read sequencing results obtained from the Illumina platform in this study will be essential to complement the Nanopore long-read sequencing results in hybrid genome assembly endeavors in the near future.

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Publication Details

Journal
Data in Brief
Published
2024-12-20
DOI
https://doi.org/10.1016/j.dib.2024.111248
Citations
5
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
1.17
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article

The first engkabang jantong (Rubroshorea macrophylla) genome survey data

Hung Hui Chung, Siong Fong Sim, Leonard Whye Kit Lim, Melinda Mei Lin Lau et al.
5 citations
Data in Brief
Genomics and Phylogenetic Studies
1.17
article

The first engkabang jantong (Rubroshorea macrophylla) genome survey data

Hung Hui Chung, Siong Fong Sim, Leonard Whye Kit Lim, Melinda Mei Lin Lau, Han Ming Gan, Asmeralda Ai Leen Soh
article en
5 citations

Abstract

The engkabang jantong (<i>Rubroshorea macrophylla</i>) is one of the most indispensable tree species for reforestation due to its high survival rate and rapid growth rate. Due to relatively low genetic interest of this tree species, its genomic landscape has since faced scarcity, impeding our further elucidation on genes that are involved in expressing its aforementioned superior properties. In this study, we performed genome survey and microsatellite analysis of engkabang jantong. Based on the results, the estimated genome size of this species is 312,071,515 bp with 18.43 % repeated sequences and 1.16 % heterozygosity. BUSCO analysis unearthed that 83.5 % of the contigs are single-copy genes whereas 12.7 % of them are duplicated. Only 2.8 % and 1 % of them are fragmented and missing respectively. The short-read sequencing results obtained from the Illumina platform in this study will be essential to complement the Nanopore long-read sequencing results in hybrid genome assembly endeavors in the near future.

Data in BriefVol. 58
Deakin University (AU), Universiti Malaysia Sarawak (MY)
Zero hunger
Openalex Percentile: Top 21%
Genomics and Phylogenetic Studies
1.17
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