Virome assembly reveals draft genomes of native Pseudomonas phages isolated from a paediatric bronchoalveolar lavage sample
We present lung virome data recovered through shotgun metagenomics in bronchoalveolar lavage fluid from an infant with cystic fibrosis, who tested positive for <i>Stenotrophomonas maltophilia</i> infection. Using a bioinformatic pipeline for virus characterization in shotgun metagenomic data, we identified five viral contigs representing Pseudomonas phages classified as Caudoviricetes.
Authors
- Montserrat Saladié (ORCID: https://orcid.org/0000-0002-0088-7233)
- Abhinav Sharma (ORCID: https://orcid.org/0000-0002-6402-6993)
- Stephen M. Stick (ORCID: https://orcid.org/0000-0002-5386-8482)
- Patricia Agudelo‐Romero (ORCID: https://orcid.org/0000-0002-3703-4111)
- Peter D. Sly (ORCID: https://orcid.org/0000-0001-6305-2201)
- Fergal O’Gara (ORCID: https://orcid.org/0000-0002-2659-0673)
- José A. Caparrós‐Martín (ORCID: https://orcid.org/0000-0003-1214-4952)
Institutions
- South African Medical Research Council (ZA)
- Australian Research Council (AU)
- Children's Medical Research Institute (AU)
- The University of Queensland (AU)
- The Kids Research Institute Australia (AU)
- The University of Western Australia (AU)
- Curtin University (AU)
- Stellenbosch University (ZA)
- University College Cork (IE)
- Harry Perkins Institute of Medical Research (AU)
- Princess Margaret Hospital for Children (AU)
- South African Tuberculosis Vaccine Initiative (ZA)
- Innovation Research Center (US)
- Perth Children's Hospital
- Friedrich Schiller University Jena (DE)
Publication Details
- Journal
- Microbiology Resource Announcements
- Published
- 2024-12-20
- DOI
- https://doi.org/10.1128/mra.01030-24
- Citations
- 1
- Primary Topic
- Bacteriophages and microbial interactions
- Type
- article
- Field-Weighted Citation Impact
- 0.46
Funders
- Cystic Fibrosis Foundation
- Health Research Board
- Medical Research Charities Group
- European Commission
- Enterprise Ireland
- Science Foundation Ireland
- Department of Health and Aged Care, Australian Government
- Irish Thoracic Society
- Medical Research Council
- National Health and Medical Research Council