Fish oocyte morphology detection using neural networks: a comparison of YOLO architectures

The recognition of oocytes, in their maturational stages, allow estimate the ovarian development and the type of spawning of a species. Although, distinguishing oocytes on histological images requires a visual and subjective interpretation by the specialist. With the development of deep learning techniques, automatic object detection has become an important mechanism for this task. However, studies that use deep learning techniques have not been widely explored for the analysis of fish oocyte samples so far. In this paper, we propose the use of YOLO, a family of convolutional neural networks, for oocyte morphology detection of Centropomus undecimalis fish. The research uses an image database with 5,680 oocytes with different maturation stadiums (PV - pre-vitellogenesis, VI - early vitellogenesis and VF - late vitellogenesis), in histological images, divided into training, testing and validation, and detection performed by YOLOv3, YOLOv4, and YOLOv5 architectures. The results obtained were promising, highlighting that the YOLOv5l model, in the detection of oocytes of the VF class, reached the best values in the metrics precision, recall, [email protected] and [email protected], with 85.4%, 95.3%, 95.7%, and 75.9%, respectively. When considering all classes, YOLOv5l was the model that obtained the best results in the analyzed metrics.

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Publication Details

Journal
Ciência Agronômica/Revista ciência agronômica
Published
2024-12-20
DOI
https://doi.org/10.5935/1806-6690.20250038
Primary Topic
Water Quality Monitoring Technologies
Type
article
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article

Fish oocyte morphology detection using neural networks: a comparison of YOLO architectures

Ewaldo Éder Carvalho Santana, Antonio Fhillipi Maciel Silva, Yanna Leidy Ketley Fernandes Cruz, Isabella Nascimento et al.
Ciência Agronômica/Revista ciência agronômica
Water Quality Monitoring Technologies
article

Fish oocyte morphology detection using neural networks: a comparison of YOLO architectures

Ewaldo Éder Carvalho Santana, Antonio Fhillipi Maciel Silva, Yanna Leidy Ketley Fernandes Cruz, Isabella Nascimento, José Ribamar de Souza Torres-Júnior, Raimunda Nonata Fortes Carvalho Neta
article en

Abstract

The recognition of oocytes, in their maturational stages, allow estimate the ovarian development and the type of spawning of a species. Although, distinguishing oocytes on histological images requires a visual and subjective interpretation by the specialist. With the development of deep learning techniques, automatic object detection has become an important mechanism for this task. However, studies that use deep learning techniques have not been widely explored for the analysis of fish oocyte samples so far. In this paper, we propose the use of YOLO, a family of convolutional neural networks, for oocyte morphology detection of Centropomus undecimalis fish. The research uses an image database with 5,680 oocytes with different maturation stadiums (PV - pre-vitellogenesis, VI - early vitellogenesis and VF - late vitellogenesis), in histological images, divided into training, testing and validation, and detection performed by YOLOv3, YOLOv4, and YOLOv5 architectures. The results obtained were promising, highlighting that the YOLOv5l model, in the detection of oocytes of the VF class, reached the best values in the metrics precision, recall, [email protected] and [email protected], with 85.4%, 95.3%, 95.7%, and 75.9%, respectively. When considering all classes, YOLOv5l was the model that obtained the best results in the analyzed metrics.

Ciência Agronômica/Revista ciência agronômicaVol. 56
Universidade Estadual do Piauí (BR), Instituto Federal do Maranhão (BR), Universidade Estadual do Maranhão (BR), Universidade Federal do Maranhão (BR)
Openalex Percentile: Top 77%
Water Quality Monitoring Technologies
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