Quantifying interpretation reproducibility in Vision Transformer models with TAVAC

Deep learning algorithms can extract meaningful diagnostic features from biomedical images, promising improved patient care in digital pathology. Vision Transformer (ViT) models capture long-range spatial relationships and offer robust prediction power and better interpretability for image classification tasks than convolutional neural network models. However, limited annotated biomedical imaging datasets can cause ViT models to overfit, leading to false predictions due to random noise. To address this, we introduce Training Attention and Validation Attention Consistency (TAVAC), a metric for evaluating ViT model overfitting and quantifying interpretation reproducibility. By comparing high-attention regions between training and testing, we tested TAVAC on four public image classification datasets and two independent breast cancer histological image datasets. Overfitted models showed significantly lower TAVAC scores. TAVAC also distinguishes off-target from on-target attentions and measures interpretation generalization at a fine-grained cellular level. Beyond diagnostics, TAVAC enhances interpretative reproducibility in basic research, revealing critical spatial patterns and cellular structures of biomedical and other general nonbiomedical images.

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Publication Details

Journal
Science Advances
Published
2024-12-20
DOI
https://doi.org/10.1126/sciadv.abg0264
Citations
5
Primary Topic
AI in cancer detection
Type
article
Field-Weighted Citation Impact
1.74

Funders

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article

Quantifying interpretation reproducibility in Vision Transformer models with TAVAC

J. Matthew Mahoney, Yang Liu, Dylan Agyemang, Sheng Li et al.
5 citations
Science Advances
AI in cancer detection
1.74
article

Quantifying interpretation reproducibility in Vision Transformer models with TAVAC

J. Matthew Mahoney, Yang Liu, Dylan Agyemang, Sheng Li, Yue Zhao
article en
5 citations

Abstract

Deep learning algorithms can extract meaningful diagnostic features from biomedical images, promising improved patient care in digital pathology. Vision Transformer (ViT) models capture long-range spatial relationships and offer robust prediction power and better interpretability for image classification tasks than convolutional neural network models. However, limited annotated biomedical imaging datasets can cause ViT models to overfit, leading to false predictions due to random noise. To address this, we introduce Training Attention and Validation Attention Consistency (TAVAC), a metric for evaluating ViT model overfitting and quantifying interpretation reproducibility. By comparing high-attention regions between training and testing, we tested TAVAC on four public image classification datasets and two independent breast cancer histological image datasets. Overfitted models showed significantly lower TAVAC scores. TAVAC also distinguishes off-target from on-target attentions and measures interpretation generalization at a fine-grained cellular level. Beyond diagnostics, TAVAC enhances interpretative reproducibility in basic research, revealing critical spatial patterns and cellular structures of biomedical and other general nonbiomedical images.

Science AdvancesVol. 10(51)
University of North Carolina at Chapel Hill (US), University of Southern California (US), Jackson Laboratory (US), The JAX Cancer Center
National Cancer Institute
Good health and well-being
Openalex Percentile: Top 12%
AI in cancer detection
1.74
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