Visualization of four-dimensional X-ray absorption fine structure data using a virtual reality system

X-ray spectromicroscopy is extensively utilized for nondestructive mapping of chemical states in materials. However, understanding and analyzing the geometric and topological aspects of such data pose challenges due to their representation in 4D space, encompassing (x, y, z) coordinates along with the energy (E) axis and often extending to 5D space with the inclusion of time (t) or reaction degree. In this study, we addressed this challenge by developing a new approach and introducing a device named `4D-XASView', specifically designed for visualizing X-ray absorption fine structures (XAFS) data in 4D (comprising 3D space and energy), through a multi-projection system, within the virtual reality (VR) environment. As a test case for the new system, X-ray spectromicroscopy measurements were conducted on a specimen prepared from serpentinized harzburgite sourced from the upper mantle section of the Oman ophiolite. Our 4D-XASView facilitates the visualization and analysis of the geometric and topological aspects of the data using VR goggles, enabling detailed exploration of microstructures via rotation and zooming functionalities. This capability allows us to extract XAFS spectral data by selecting specific positions and regions, thereby aiding in the identification of `trigger sites' (magnetite in serpentine), which are characteristic locations within materials that substantially influence the macroscopic propagation of reactions. Our methodology establishes a new platform for analyzing 4D or 5D XAFS data that has applicability potential in various other multidimensional datasets, including microstructures coupled with spectroscopy and diffraction data.

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Publication Details

Journal
Journal of Synchrotron Radiation
Published
2024-12-20
DOI
https://doi.org/10.1107/s1600577524011226
Citations
2
Primary Topic
Geochemistry and Geologic Mapping
Type
article
Field-Weighted Citation Impact
0.69

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article

Visualization of four-dimensional X-ray absorption fine structure data using a virtual reality system

Masao Kimura, Atsushi Okamoto, Haruo Igarashi, Yasuhiro Niwa et al.
2 citations
Journal of Synchrotron Radiation
Geochemistry and Geologic Mapping
0.69
article

Visualization of four-dimensional X-ray absorption fine structure data using a virtual reality system

Masao Kimura, Atsushi Okamoto, Haruo Igarashi, Yasuhiro Niwa, Yutaka Ishii, Daiki Kido
article en
2 citations

Abstract

X-ray spectromicroscopy is extensively utilized for nondestructive mapping of chemical states in materials. However, understanding and analyzing the geometric and topological aspects of such data pose challenges due to their representation in 4D space, encompassing (x, y, z) coordinates along with the energy (E) axis and often extending to 5D space with the inclusion of time (t) or reaction degree. In this study, we addressed this challenge by developing a new approach and introducing a device named `4D-XASView', specifically designed for visualizing X-ray absorption fine structures (XAFS) data in 4D (comprising 3D space and energy), through a multi-projection system, within the virtual reality (VR) environment. As a test case for the new system, X-ray spectromicroscopy measurements were conducted on a specimen prepared from serpentinized harzburgite sourced from the upper mantle section of the Oman ophiolite. Our 4D-XASView facilitates the visualization and analysis of the geometric and topological aspects of the data using VR goggles, enabling detailed exploration of microstructures via rotation and zooming functionalities. This capability allows us to extract XAFS spectral data by selecting specific positions and regions, thereby aiding in the identification of `trigger sites' (magnetite in serpentine), which are characteristic locations within materials that substantially influence the macroscopic propagation of reactions. Our methodology establishes a new platform for analyzing 4D or 5D XAFS data that has applicability potential in various other multidimensional datasets, including microstructures coupled with spectroscopy and diffraction data.

Journal of Synchrotron RadiationVol. 32(1)
Kyushu University (JP), High Energy Accelerator Research Organization (JP), Waseda University (JP), Tohoku University (JP)
Tateisi Science and Technology Foundation, Iron and Steel Institute of Japan, Japan Society for the Promotion of Science, Japan Science and Technology Agency, JST-Mirai Program
Openalex Percentile: Top 22%
Geochemistry and Geologic Mapping
0.69
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