Scope+: an open source generalizable architecture for single-cell RNA-seq atlases at sample and cell levels
The COVID-19 web portal, data and meta-analysis are available on Covidscope (https://covidsc.d24h.hk/). User tutorials on how to implement Scope+ architecture with their atlases can be found at https://hiyin.github.io/scopeplus-user-tutorial/. Scope+ source code can be found at https://doi.org/10.5281/zenodo.14174632 and https://github.com/hiyin/scopeplus.
Authors
- Danqing Yin (ORCID: https://orcid.org/0000-0003-0448-4754)
- Joshua W. K. Ho (ORCID: https://orcid.org/0000-0003-2331-7011)
- Jean Yang (ORCID: https://orcid.org/0000-0002-5271-2603)
- Candice L.Y. Mak
- Yingxin Lin (ORCID: https://orcid.org/0000-0002-4299-7326)
- Ken H.O. Yu
- Jia Li (ORCID: https://orcid.org/0000-0002-3108-8645)
- Jiaxuan Zhang (ORCID: https://orcid.org/0000-0003-3212-7738)
- Junyi Chen (ORCID: https://orcid.org/0000-0003-3999-6979)
- Yue Cao (ORCID: https://orcid.org/0009-0001-3785-7281)
Institutions
- The University of Sydney (AU)
- Department of Health (CN)
- Cooperative Trials Group for Neuro-Oncology (AU)
- Guangzhou Experimental Station (CN)
- First Affiliated Hospital of Guangzhou Medical University (CN)
- Guangzhou Regenerative Medicine and Health Guangdong Laboratory (CN)
- National Clinical Research (US)
- State Key Laboratory of Respiratory Disease (CN)
- Laboratory of Data Discovery for Health (HK)
- University of Hong Kong (HK)
- Guangzhou Medical University (CN)
Publication Details
- Journal
- Bioinformatics
- Published
- 2024-12-20
- DOI
- https://doi.org/10.1093/bioinformatics/btae727
- Citations
- 2
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.47
Funders
- University of Sydney
- Innovation and Technology Commission
- University of Hong Kong