Conversion of pyridoxal to pyridoxamine with <scp>NH</scp> <sub>3</sub> and <scp>H</scp> <sub>2</sub> on nickel generates a protometabolic nitrogen shuttle under serpentinizing conditions

Serpentinizing hydrothermal vents are likely sites for the origin of metabolism because they produce H<sub>2</sub> as a source of electrons for CO<sub>2</sub> reduction while depositing zero-valent iron, cobalt, and nickel as catalysts for organic reactions. Recent work has shown that solid-state nickel can catalyze the H<sub>2</sub>-dependent reduction of CO<sub>2</sub> to various organic acids and their reductive amination with H<sub>2</sub> and NH<sub>3</sub> to biological amino acids under the conditions of H<sub>2</sub>-producing hydrothermal vents and that amino acid synthesis from NH<sub>3</sub>, H<sub>2</sub>, and 2-oxoacids is facile in the presence of Ni<sup>0</sup>. Such reactions suggest a metallic origin of metabolism during early biochemical evolution because single metals replace the function of over 130 enzymatic reactions at the core of metabolism in microbes that use the acetyl-CoA pathway of CO<sub>2</sub> fixation. Yet solid-state catalysts tether primordial amino synthesis to a mineral surface. Many studies have shown that pyridoxal catalyzes transamination reactions without enzymes. Here we show that pyridoxamine, the NH<sub>2</sub>-transferring intermediate in pyridoxal-dependent transamination reactions, is generated from pyridoxal by reaction with NH<sub>3</sub> (as little as 5 mm) and H<sub>2</sub> (5 bar) on Ni<sup>0</sup> as catalyst at pH 11 and 80 °C within hours. These conditions correspond to those in hydrothermal vents undergoing active serpentinization. The results indicate that at the origin of metabolism, pyridoxamine provided a soluble, organic amino donor for aqueous amino acid synthesis, mediating an evolutionary transition from NH<sub>3</sub>-dependent amino acid synthesis on inorganic surfaces to pyridoxamine-dependent organic reactions in the aqueous phase.

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Publication Details

Journal
FEBS Journal
Published
2024-12-19
DOI
https://doi.org/10.1111/febs.17357
Citations
5
Primary Topic
Origins and Evolution of Life
Type
article
Field-Weighted Citation Impact
1.66

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article

Conversion of pyridoxal to pyridoxamine with NH 3 and H 2 on nickel generates a protometabolic nitrogen shuttle under serpentinizing conditions

William Martin, Loraine Schwander, Max Brabender, M. Burmeister et al.
5 citations
FEBS Journal
Origins and Evolution of Life
1.66
article

Conversion of pyridoxal to pyridoxamine with NH 3 and H 2 on nickel generates a protometabolic nitrogen shuttle under serpentinizing conditions

William Martin, Loraine Schwander, Max Brabender, M. Burmeister, Carolina García García, Joseph Moran, Sabine Metzger, Manon Laura Schlikker
article en
5 citations

Abstract

Serpentinizing hydrothermal vents are likely sites for the origin of metabolism because they produce H<sub>2</sub> as a source of electrons for CO<sub>2</sub> reduction while depositing zero-valent iron, cobalt, and nickel as catalysts for organic reactions. Recent work has shown that solid-state nickel can catalyze the H<sub>2</sub>-dependent reduction of CO<sub>2</sub> to various organic acids and their reductive amination with H<sub>2</sub> and NH<sub>3</sub> to biological amino acids under the conditions of H<sub>2</sub>-producing hydrothermal vents and that amino acid synthesis from NH<sub>3</sub>, H<sub>2</sub>, and 2-oxoacids is facile in the presence of Ni<sup>0</sup>. Such reactions suggest a metallic origin of metabolism during early biochemical evolution because single metals replace the function of over 130 enzymatic reactions at the core of metabolism in microbes that use the acetyl-CoA pathway of CO<sub>2</sub> fixation. Yet solid-state catalysts tether primordial amino synthesis to a mineral surface. Many studies have shown that pyridoxal catalyzes transamination reactions without enzymes. Here we show that pyridoxamine, the NH<sub>2</sub>-transferring intermediate in pyridoxal-dependent transamination reactions, is generated from pyridoxal by reaction with NH<sub>3</sub> (as little as 5 mm) and H<sub>2</sub> (5 bar) on Ni<sup>0</sup> as catalyst at pH 11 and 80 °C within hours. These conditions correspond to those in hydrothermal vents undergoing active serpentinization. The results indicate that at the origin of metabolism, pyridoxamine provided a soluble, organic amino donor for aqueous amino acid synthesis, mediating an evolutionary transition from NH<sub>3</sub>-dependent amino acid synthesis on inorganic surfaces to pyridoxamine-dependent organic reactions in the aqueous phase.

FEBS JournalVol. 292(12)
Centre National de la Recherche Scientifique (FR), University of Ottawa (CA), Institut de Science et d'Ingénierie Supramoléculaires (FR), Heinrich Heine University Düsseldorf (DE), Université de Strasbourg (FR)
European Commission, Deutsche Forschungsgemeinschaft, Volkswagen Foundation, H2020 European Research Council
Clean water and sanitation
Openalex Percentile: Top 16%
Origins and Evolution of Life
1.66
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