Identification of diversity-generating retroelements in host-associated and environmental genomes: prevalence, diversity, and roles

Our research sheds light on the widespread prevalence of DGRs within environments and taxa, and supports the DGR phylogenetic divergence in different organisms. These variations might also occur in their structures since some cassette architectures were common in specific underrepresented phyla. In addition, we suggest that VRs could be found in domains different to the CLec, which should be further explored for organisms in scarcely studied environments.

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Publication Details

Journal
BMC Genomics
Published
2024-12-20
DOI
https://doi.org/10.1186/s12864-024-11124-1
Citations
3
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.70

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article

Identification of diversity-generating retroelements in host-associated and environmental genomes: prevalence, diversity, and roles

Chaochun Wei, Congrong Wang, Mariela Carrasco-Villanueva
3 citations
BMC Genomics
Genomics and Phylogenetic Studies
0.70
article

Identification of diversity-generating retroelements in host-associated and environmental genomes: prevalence, diversity, and roles

Chaochun Wei, Congrong Wang, Mariela Carrasco-Villanueva
article en
3 citations

Abstract

Our research sheds light on the widespread prevalence of DGRs within environments and taxa, and supports the DGR phylogenetic divergence in different organisms. These variations might also occur in their structures since some cassette architectures were common in specific underrepresented phyla. In addition, we suggest that VRs could be found in domains different to the CLec, which should be further explored for organisms in scarcely studied environments.

BMC GenomicsVol. 25(1)
Shanghai Jiao Tong University (CN)
Natural Science Foundation of Shanghai, National Natural Science Foundation of China, Shanghai Jiao Tong University, National Key Research and Development Program of China
Openalex Percentile: Top 28%
Genomics and Phylogenetic Studies
0.70
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