Genome-based reclassification of Sphingobacterium soli Fu et al. 2017 as a later heterotypic synonym of Sphingobacterium cellulitidis Huys et al. 2017 and proposal of Sphingobacterium siyangense subsp. siyangense subsp. nov. and Sphingobacterium siya

<i>Sphingobacterium</i>, as the type genus of the family <i>Sphingobacteriaceae</i>, comprises a diverse array of species found in various environments. In this study, we aim to reassess and elucidate the taxonomic relationships of <i>Sphingobacterium</i> species. Based on 16S rRNA gene sequences, the phylogeny of 70 validly published <i>Sphingobacterium</i> species was reconstructed. Of which, 50 species with available genomes were further subjected to overall genome relatedness indices (OGRI) analysis, resulting in the identification of distinct pairs of closely related species. One such pair, consisting of the type strains of <i>Sphingobacterium soli</i> and <i>Sphingobacterium cellulitidis</i>, exhibited an average nucleotide identity (ANI) of 97.7%, a digital DNA-DNA hybridization (dDDH) of 80.1% and an average amino acid identity (AAI) of 98.3%, alongside a 16S rRNA gene sequence similarity of 99.8%. Based on the phylogenetic, OGRI and phenotypical evidence, we propose <i>S. soli</i> as a later heterotypic synonym of <i>S. cellulitidis</i>. Additionally, another pair of type strains, <i>Sphingobacterium siyangense</i> and <i>Sphingobacterium cladoniae</i>, possessed ANI, dDDH, AAI and 16S rRNA gene sequence similarity values of 96.3, 70.1, 96.0 and 99.0%, respectively. These values, together with differences in phenotypic traits, support the proposal of two subspecies within this taxonomic lineage. Thus, we propose the establishment of two new subspecies, <i>S. siyangense</i> subsp. <i>siyangense</i> subsp. nov. and <i>S. siyangense</i> subsp. <i>cladoniae</i> subsp. nov.

Authors

Institutions

Publication Details

Journal
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2024-12-19
DOI
https://doi.org/10.1099/ijsem.0.006610
Citations
1
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.23

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Genome-based reclassification of Sphingobacterium soli Fu et al. 2017 as a later heterotypic synonym of Sphingobacterium cellulitidis Huys et al. 2017 and proposal of Sphingobacterium siyangense subsp. siyangense subsp. nov. and Sphingobacterium siya

Jie Huang, Shuai Li, Jun Liu, Wen‐Jun Li et al.
1 citations
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
0.23
article

Genome-based reclassification of Sphingobacterium soli Fu et al. 2017 as a later heterotypic synonym of Sphingobacterium cellulitidis Huys et al. 2017 and proposal of Sphingobacterium siyangense subsp. siyangense subsp. nov. and Sphingobacterium siya

Jie Huang, Shuai Li, Jun Liu, Wen‐Jun Li, Lei Hua Dong
article en
1 citations

Abstract

<i>Sphingobacterium</i>, as the type genus of the family <i>Sphingobacteriaceae</i>, comprises a diverse array of species found in various environments. In this study, we aim to reassess and elucidate the taxonomic relationships of <i>Sphingobacterium</i> species. Based on 16S rRNA gene sequences, the phylogeny of 70 validly published <i>Sphingobacterium</i> species was reconstructed. Of which, 50 species with available genomes were further subjected to overall genome relatedness indices (OGRI) analysis, resulting in the identification of distinct pairs of closely related species. One such pair, consisting of the type strains of <i>Sphingobacterium soli</i> and <i>Sphingobacterium cellulitidis</i>, exhibited an average nucleotide identity (ANI) of 97.7%, a digital DNA-DNA hybridization (dDDH) of 80.1% and an average amino acid identity (AAI) of 98.3%, alongside a 16S rRNA gene sequence similarity of 99.8%. Based on the phylogenetic, OGRI and phenotypical evidence, we propose <i>S. soli</i> as a later heterotypic synonym of <i>S. cellulitidis</i>. Additionally, another pair of type strains, <i>Sphingobacterium siyangense</i> and <i>Sphingobacterium cladoniae</i>, possessed ANI, dDDH, AAI and 16S rRNA gene sequence similarity values of 96.3, 70.1, 96.0 and 99.0%, respectively. These values, together with differences in phenotypic traits, support the proposal of two subspecies within this taxonomic lineage. Thus, we propose the establishment of two new subspecies, <i>S. siyangense</i> subsp. <i>siyangense</i> subsp. nov. and <i>S. siyangense</i> subsp. <i>cladoniae</i> subsp. nov.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 74(12)
Sun Yat-sen University (CN), Chinese Academy of Sciences (CN), Xinjiang Institute of Ecology and Geography (CN), Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) (CN), Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai) (CN)
National Natural Science Foundation of China, Basic and Applied Basic Research Foundation of Guangdong Province
Life in Land
Openalex Percentile: Top 40%
Genomics and Phylogenetic Studies
0.23
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.