Using Large Language Models for Extracting Structured Information From Scientific Texts

Abstract Extracting structured information from scientific works is challenging as sought parameters or properties are often scattered across lengthy texts. We introduce a novel iterative approach using Large Language Models (LLMs) to automate this process. Our method first condenses scientific literature, preserving essential information in a dense format, then retrieves predefined attributes. As a biomedical application example, our concept is employed to extract experimental parameters for preparing Metal-Organic Frameworks (MOFs) from scientific work to enable complex and information-rich applications in the biotechnology-oriented life sciences. Our open-source method automates extracting information from verbose texts, converting them into structured and easily navigable data. This considerably improves scientific literature research by utilizing the power of LLMs and paves the way for enhanced and faster information extraction from extensive scientific texts.

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Publication Details

Journal
Current Directions in Biomedical Engineering
Published
2024-12-01
DOI
https://doi.org/10.1515/cdbme-2024-2129
Citations
3
Primary Topic
Topic Modeling
Type
article
Field-Weighted Citation Impact
1.04
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article

Using Large Language Models for Extracting Structured Information From Scientific Texts

Christof M. Niemeyer, Markus Reischl, Mark Schutera, Kersten S. Rabe et al.
3 citations
Current Directions in Biomedical Engineering
Topic Modeling
1.04
article

Using Large Language Models for Extracting Structured Information From Scientific Texts

Christof M. Niemeyer, Markus Reischl, Mark Schutera, Kersten S. Rabe, Luca Rettenberger, Marc F. Münker
article en
3 citations

Abstract

Abstract Extracting structured information from scientific works is challenging as sought parameters or properties are often scattered across lengthy texts. We introduce a novel iterative approach using Large Language Models (LLMs) to automate this process. Our method first condenses scientific literature, preserving essential information in a dense format, then retrieves predefined attributes. As a biomedical application example, our concept is employed to extract experimental parameters for preparing Metal-Organic Frameworks (MOFs) from scientific work to enable complex and information-rich applications in the biotechnology-oriented life sciences. Our open-source method automates extracting information from verbose texts, converting them into structured and easily navigable data. This considerably improves scientific literature research by utilizing the power of LLMs and paves the way for enhanced and faster information extraction from extensive scientific texts.

Current Directions in Biomedical EngineeringVol. 10(4)
Karlsruhe Institute of Technology (DE)
Openalex Percentile: Top 18%
Topic Modeling
1.04
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