Towards Liver Segmentation in Laparoscopic Images by Training U-Net With Synthetic Data

Abstract The lack of labeled, intraoperative patient data in medical scenarios poses a relevant challenge for machine learning applications. Given the apparent power of machine learning, this study examines how synthetically-generated data can help to reduce the amount of clinical data needed for robust liver surface segmentation in laparoscopic images. Here, we report the results of three experiments, using 525 annotated clinical images from 5 patients alongside 20,000 synthetic photo-realistic images from 10 patient models. The effectiveness of the use of synthetic data is compared to the use of data augmentation, a traditional performance-enhancing technique. For training, a supervised approach employing the U-Net architecture was chosen. The results of these experiments show a progressive increase in accuracy. Our base experiment on clinical data yielded an F 1 score of 0.72. Applying data augmentation to this model increased the F 1 score to 0.76. Our model pre-trained on synthetic data and fine-tuned with augmented data achieved an F 1 score of 0.80, a 4% increase. Additionally, a model evaluation involving k-fold cross validation highlighted the dependency of the result on the test set. These results demonstrate that leveraging synthetic data has the ability of limiting the need for more patient data to increase the segmentation performance.

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Publication Details

Journal
Current Directions in Biomedical Engineering
Published
2024-12-01
DOI
https://doi.org/10.1515/cdbme-2024-2147
Primary Topic
AI in cancer detection
Type
article
Field-Weighted Citation Impact
0.00
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article

Towards Liver Segmentation in Laparoscopic Images by Training U-Net With Synthetic Data

Werner Nahm, Jonathan P. Sleeman, Lorena Krames
Current Directions in Biomedical Engineering
AI in cancer detection
article

Towards Liver Segmentation in Laparoscopic Images by Training U-Net With Synthetic Data

Werner Nahm, Jonathan P. Sleeman, Lorena Krames
article en

Abstract

Abstract The lack of labeled, intraoperative patient data in medical scenarios poses a relevant challenge for machine learning applications. Given the apparent power of machine learning, this study examines how synthetically-generated data can help to reduce the amount of clinical data needed for robust liver surface segmentation in laparoscopic images. Here, we report the results of three experiments, using 525 annotated clinical images from 5 patients alongside 20,000 synthetic photo-realistic images from 10 patient models. The effectiveness of the use of synthetic data is compared to the use of data augmentation, a traditional performance-enhancing technique. For training, a supervised approach employing the U-Net architecture was chosen. The results of these experiments show a progressive increase in accuracy. Our base experiment on clinical data yielded an F 1 score of 0.72. Applying data augmentation to this model increased the F 1 score to 0.76. Our model pre-trained on synthetic data and fine-tuned with augmented data achieved an F 1 score of 0.80, a 4% increase. Additionally, a model evaluation involving k-fold cross validation highlighted the dependency of the result on the test set. These results demonstrate that leveraging synthetic data has the ability of limiting the need for more patient data to increase the segmentation performance.

Current Directions in Biomedical EngineeringVol. 10(4)
Karlsruhe Institute of Technology (DE)
Openalex Percentile: Top 79%
AI in cancer detection
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