The Complete Mitochondrial Genome of the Luciocyprinus langsoni (Cypriniformes: Cyprinidae): Characterization, Phylogeny, and Genetic Diversity Analysis

<b>Background</b>: <i>Luciocyprinus langsoni</i> is a species belonging to the Cyprinidae family. The objective of this study is to gain a comprehensive understanding of its evolutionary history and genetic characteristics. <b>Methods</b>: The complete mitochondrial genome of <i>L</i>. <i>langsoni</i> was determined using overlapping PCR. A phylogenetic analysis was conducted based on 13 protein-coding genes from 48 species. A population genetic diversity analysis using the <i>COI</i> gene and a selection analysis of 13 protein-coding genes were also performed. <b>Results</b>: The mitogenome is 16,586 base pairs long and consists of 13 protein-coding genes, two ribosomal RNAs, 22 transfer RNAs, and two control regions. It has a high adenine-thymine (A + T) content. The phylogenetic analysis confirms the placement of <i>L</i>. <i>langsoni</i> within the subfamily <i>Cyprininae</i>. The population genetic diversity analysis reveals low variability in the Hechi Longjiang population. The selection analysis shows that all 13 protein-coding genes have evolved under purifying selection with Ka/Ks ratios below 1. <b>Conclusions</b>: These results enhance our understanding of <i>L</i>. <i>langsoni</i>'s evolutionary history and lay a genetic foundation for future studies in population genetics and phylogenetics.

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Publication Details

Journal
Genes
Published
2024-12-18
DOI
https://doi.org/10.3390/genes15121621
Citations
3
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.70

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article

The Complete Mitochondrial Genome of the Luciocyprinus langsoni (Cypriniformes: Cyprinidae): Characterization, Phylogeny, and Genetic Diversity Analysis

Xiaoyu Hao, Zhiguo Hu, Yuanye Ma, Qingqing He et al.
3 citations
Genes
Genomics and Phylogenetic Studies
0.70
article

The Complete Mitochondrial Genome of the Luciocyprinus langsoni (Cypriniformes: Cyprinidae): Characterization, Phylogeny, and Genetic Diversity Analysis

Xiaoyu Hao, Zhiguo Hu, Yuanye Ma, Qingqing He, Chaoqun Su, Jiayin Kang, Chenxi Tan, Fan Li, Wenchao Zhang, Liangjie Zhao, Tiezhu Yang, W.H. Zou
article en
3 citations

Abstract

<b>Background</b>: <i>Luciocyprinus langsoni</i> is a species belonging to the Cyprinidae family. The objective of this study is to gain a comprehensive understanding of its evolutionary history and genetic characteristics. <b>Methods</b>: The complete mitochondrial genome of <i>L</i>. <i>langsoni</i> was determined using overlapping PCR. A phylogenetic analysis was conducted based on 13 protein-coding genes from 48 species. A population genetic diversity analysis using the <i>COI</i> gene and a selection analysis of 13 protein-coding genes were also performed. <b>Results</b>: The mitogenome is 16,586 base pairs long and consists of 13 protein-coding genes, two ribosomal RNAs, 22 transfer RNAs, and two control regions. It has a high adenine-thymine (A + T) content. The phylogenetic analysis confirms the placement of <i>L</i>. <i>langsoni</i> within the subfamily <i>Cyprininae</i>. The population genetic diversity analysis reveals low variability in the Hechi Longjiang population. The selection analysis shows that all 13 protein-coding genes have evolved under purifying selection with Ka/Ks ratios below 1. <b>Conclusions</b>: These results enhance our understanding of <i>L</i>. <i>langsoni</i>'s evolutionary history and lay a genetic foundation for future studies in population genetics and phylogenetics.

GenesVol. 15(12)
Shanghai Science and Technology Museum (CN), Xinyang Agriculture and Forestry University (CN)
Natural Science Foundation of Henan Province
Life below water
Openalex Percentile: Top 28%
Genomics and Phylogenetic Studies
0.70
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