The Complete Mitochondrial Genome of the Luciocyprinus langsoni (Cypriniformes: Cyprinidae): Characterization, Phylogeny, and Genetic Diversity Analysis
<b>Background</b>: <i>Luciocyprinus langsoni</i> is a species belonging to the Cyprinidae family. The objective of this study is to gain a comprehensive understanding of its evolutionary history and genetic characteristics. <b>Methods</b>: The complete mitochondrial genome of <i>L</i>. <i>langsoni</i> was determined using overlapping PCR. A phylogenetic analysis was conducted based on 13 protein-coding genes from 48 species. A population genetic diversity analysis using the <i>COI</i> gene and a selection analysis of 13 protein-coding genes were also performed. <b>Results</b>: The mitogenome is 16,586 base pairs long and consists of 13 protein-coding genes, two ribosomal RNAs, 22 transfer RNAs, and two control regions. It has a high adenine-thymine (A + T) content. The phylogenetic analysis confirms the placement of <i>L</i>. <i>langsoni</i> within the subfamily <i>Cyprininae</i>. The population genetic diversity analysis reveals low variability in the Hechi Longjiang population. The selection analysis shows that all 13 protein-coding genes have evolved under purifying selection with Ka/Ks ratios below 1. <b>Conclusions</b>: These results enhance our understanding of <i>L</i>. <i>langsoni</i>'s evolutionary history and lay a genetic foundation for future studies in population genetics and phylogenetics.
Authors
- Xiaoyu Hao (ORCID: https://orcid.org/0000-0003-4115-9475)
- Zhiguo Hu (ORCID: https://orcid.org/0000-0002-8487-0796)
- Yuanye Ma (ORCID: https://orcid.org/0000-0003-3007-2390)
- Qingqing He (ORCID: https://orcid.org/0000-0002-6712-0133)
- Chaoqun Su
- Jiayin Kang
- Chenxi Tan (ORCID: https://orcid.org/0000-0002-7100-1989)
- Fan Li (ORCID: https://orcid.org/0000-0002-0868-1694)
- Wenchao Zhang (ORCID: https://orcid.org/0000-0002-6815-7173)
- Liangjie Zhao
- Tiezhu Yang (ORCID: https://orcid.org/0000-0003-4968-7424)
- W.H. Zou
Institutions
- Shanghai Science and Technology Museum (CN)
- Xinyang Agriculture and Forestry University (CN)
Publication Details
- Journal
- Genes
- Published
- 2024-12-18
- DOI
- https://doi.org/10.3390/genes15121621
- Citations
- 3
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.70
Funders
- Natural Science Foundation of Henan Province