Genome description of a potentially new species of Streptomyces isolated from the Indian Sundarbans mangrove

A potentially new species of <i>Streptomyces</i> was isolated from station 177 of the Sundarbans Seasonal Time Series in the Indian Sundarbans mangrove. The isolate was cultured from a sediment sample on TYS medium of salinity 15. Sequencing and annotation of the 16S rRNA showed 100% identity against <i>S. laurentii</i> NPS17 against GenBank/ENA/DDBJ. Annotation of the whole genome against the GTDB database showed closest identity with <i>S. terrae</i> SKN60 and belongs to the same clade as <i>S. roseicoloratus</i> TRM44457T and <i>S. laurentii</i> ATCC 31255. The genome is ~7.2 Mb and has a G+C% of 73%. The average amino acid identity was 85.01% with <i>S. roseicoloratus</i> and 80.34% with <i>S. roseolus</i>. The assembly reflected the presence of all essential genes and had 19 biosynthetic gene clusters predicted.

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Access Microbiology
Published
2024-12-01
DOI
https://doi.org/10.1099/acmi.0.000892.v5
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

Genome description of a potentially new species of Streptomyces isolated from the Indian Sundarbans mangrove

R. Chandrasekaran, Punyasloke Bhadury, Anwesha Ghosh, Simran Kaur Bhambra
Access Microbiology
Genomics and Phylogenetic Studies
article

Genome description of a potentially new species of Streptomyces isolated from the Indian Sundarbans mangrove

R. Chandrasekaran, Punyasloke Bhadury, Anwesha Ghosh, Simran Kaur Bhambra
article en

Abstract

A potentially new species of <i>Streptomyces</i> was isolated from station 177 of the Sundarbans Seasonal Time Series in the Indian Sundarbans mangrove. The isolate was cultured from a sediment sample on TYS medium of salinity 15. Sequencing and annotation of the 16S rRNA showed 100% identity against <i>S. laurentii</i> NPS17 against GenBank/ENA/DDBJ. Annotation of the whole genome against the GTDB database showed closest identity with <i>S. terrae</i> SKN60 and belongs to the same clade as <i>S. roseicoloratus</i> TRM44457T and <i>S. laurentii</i> ATCC 31255. The genome is ~7.2 Mb and has a G+C% of 73%. The average amino acid identity was 85.01% with <i>S. roseicoloratus</i> and 80.34% with <i>S. roseolus</i>. The assembly reflected the presence of all essential genes and had 19 biosynthetic gene clusters predicted.

Access MicrobiologyVol. 6(12)
Indian Institute of Science Education and Research Kolkata (IN)
Department of Science and Technology, Ministry of Science and Technology, India, Indian Institute of Science Education and Research Mohali, Indian Institute of Science Education and Research Kolkata
Life below water
Openalex Percentile: Top 79%
Genomics and Phylogenetic Studies
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