Inferring phase transitions and critical exponents from limited observations with thermodynamic maps

Phase transitions are ubiquitous across life, yet hard to quantify and describe accurately. In this work, we develop an approach for characterizing generic attributes of phase transitions from very limited observations made deep within different phases' domains of stability. Our approach is called thermodynamic maps (TM), which combines statistical mechanics and molecular simulations with score-based generative models. TM enable learning the temperature dependence of arbitrary thermodynamic observables across a wide range of temperatures. We show its usefulness by calculating phase transition attributes such as melting temperature, temperature-dependent heat capacities, and critical exponents. For instance, we demonstrate the ability of TM to infer the ferromagnetic phase transition of the Ising model, including temperature-dependent heat capacity and critical exponents, despite never having seen samples from the transition region. In addition, we efficiently characterize the temperature-dependent conformational ensemble and compute melting curves of the two RNA systems: a GCAA tetraloop and the HIV-TAR RNA, which are notoriously hard to sample due to glassy-like energy landscapes.

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Publication Details

Journal
Proceedings of the National Academy of Sciences
Published
2024-12-16
DOI
https://doi.org/10.1073/pnas.2321971121
Citations
20
Primary Topic
Protein Structure and Dynamics
Type
article
Field-Weighted Citation Impact
4.68

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article

Inferring phase transitions and critical exponents from limited observations with thermodynamic maps

Kinjal Mondal, John S. Schneekloth, Pratyush Tiwary, Lukas Herron
20 citations
Proceedings of the National Academy of Sciences
Protein Structure and Dynamics
4.68
article

Inferring phase transitions and critical exponents from limited observations with thermodynamic maps

Kinjal Mondal, John S. Schneekloth, Pratyush Tiwary, Lukas Herron
article en
20 citations

Abstract

Phase transitions are ubiquitous across life, yet hard to quantify and describe accurately. In this work, we develop an approach for characterizing generic attributes of phase transitions from very limited observations made deep within different phases' domains of stability. Our approach is called thermodynamic maps (TM), which combines statistical mechanics and molecular simulations with score-based generative models. TM enable learning the temperature dependence of arbitrary thermodynamic observables across a wide range of temperatures. We show its usefulness by calculating phase transition attributes such as melting temperature, temperature-dependent heat capacities, and critical exponents. For instance, we demonstrate the ability of TM to infer the ferromagnetic phase transition of the Ising model, including temperature-dependent heat capacity and critical exponents, despite never having seen samples from the transition region. In addition, we efficiently characterize the temperature-dependent conformational ensemble and compute melting curves of the two RNA systems: a GCAA tetraloop and the HIV-TAR RNA, which are notoriously hard to sample due to glassy-like energy landscapes.

Proceedings of the National Academy of SciencesVol. 121(52)
NOAA Chemical Sciences Laboratory (US), University of Maryland, College Park (US)
National Science Foundation, National Cancer Institute
Affordable and clean energy
Openalex Percentile: Top 4%
Protein Structure and Dynamics
4.68
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