Using machine learning to improve the hard modeling of NMR time series

Modeling time series of NMR spectra is a useful method to accurately extract information such as temporal concentration profiles from complex processes, e.g. reactions. Modeling these time series by using nonlinear optimization often suffers from high runtimes. On the other hand, using deep learning solves the modeling problem quickly, especially for single spectra with separated peaks. However, the accuracy decreases significantly when peaks overlap or cross. We propose a hybrid approach combining the strengths of both methods while mitigating their drawbacks. This hybrid methods improves on a previous work (Meinhardt et al., 2022) and employs neural networks to predict initial parameters for the optimization algorithm, which only needs to fine-tune the parameters afterwards. We present results for both constructed and experimental data sets and achieve improvements in both runtime and accuracy.

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Publication Details

Journal
Journal of Magnetic Resonance
Published
2024-12-16
DOI
https://doi.org/10.1016/j.jmr.2024.107813
Citations
4
Primary Topic
Metabolomics and Mass Spectrometry Studies
Type
article
Field-Weighted Citation Impact
0.94

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article

Using machine learning to improve the hard modeling of NMR time series

Klaus Neymeyr, Jan Hellwig, Tobias Strauß, Erik von Harbou
4 citations
Journal of Magnetic Resonance
Metabolomics and Mass Spectrometry Studies
0.94
article

Using machine learning to improve the hard modeling of NMR time series

Klaus Neymeyr, Jan Hellwig, Tobias Strauß, Erik von Harbou
article en
4 citations

Abstract

Modeling time series of NMR spectra is a useful method to accurately extract information such as temporal concentration profiles from complex processes, e.g. reactions. Modeling these time series by using nonlinear optimization often suffers from high runtimes. On the other hand, using deep learning solves the modeling problem quickly, especially for single spectra with separated peaks. However, the accuracy decreases significantly when peaks overlap or cross. We propose a hybrid approach combining the strengths of both methods while mitigating their drawbacks. This hybrid methods improves on a previous work (Meinhardt et al., 2022) and employs neural networks to predict initial parameters for the optimization algorithm, which only needs to fine-tune the parameters afterwards. We present results for both constructed and experimental data sets and achieve improvements in both runtime and accuracy.

Journal of Magnetic ResonanceVol. 370
University of Kaiserslautern (DE), Leibniz Institute for Catalysis (DE), University of Rostock (DE)
Universität Rostock
Openalex Percentile: Top 24%
Metabolomics and Mass Spectrometry Studies
0.94
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