Polyphonia: detecting inter-sample contamination in viral genomic sequencing data
Polyphonia is available as a standalone Docker image and is also included as part of viral-ngs, available in Dockstore. Full documentation, source code, and instructions for use are available at https://github.com/broadinstitute/polyphonia.
Authors
- Katherine J. Siddle (ORCID: https://orcid.org/0000-0002-1799-7295)
- Christopher H. Tomkins-Tinch (ORCID: https://orcid.org/0000-0002-9114-6421)
- Alton C. Gayton (ORCID: https://orcid.org/0000-0002-2411-0621)
- Sabrina T. Dobbins
- Lydia A. Krasilnikova (ORCID: https://orcid.org/0000-0003-4163-706X)
- Pardis C. Sabeti (ORCID: https://orcid.org/0000-0002-9843-1890)
- S. F. Schaffner (ORCID: https://orcid.org/0000-0001-6699-3568)
- Adrianne Gladden-Young (ORCID: https://orcid.org/0000-0001-6307-0012)
- Daniel J. Park (ORCID: https://orcid.org/0000-0001-7226-7781)
Institutions
- Broad Institute (US)
- Tufts University (US)
- Howard Hughes Medical Institute (US)
- Harvard University (US)
- Brown University (US)
- Concord Consortium (US)
Publication Details
- Journal
- Bioinformatics
- Published
- 2024-11-28
- DOI
- https://doi.org/10.1093/bioinformatics/btae698
- Citations
- 1
- Primary Topic
- Genomics and Phylogenetic Studies
- Type
- article
- Field-Weighted Citation Impact
- 0.23
Funders
- Open Philanthropy Project
- Skoll Foundation
- ELMA Foundation
- National Institutes of Health
- Centers for Disease Control and Prevention
- National Institute of Allergy and Infectious Diseases