Genome-Wide Identification, Functional Characterization, and Stress-Responsive Expression Profiling of Subtilase (SBT) Gene Family in Peanut (Arachis hypogaea L.)

Subtilases (SBTs), known as serine proteases or phytoproteases in plants, are crucial enzymes involved in plant development, growth, and signaling pathways. Despite their recognized importance in other plant species, information regarding their functional roles in cultivated peanut (<i>Arachis hypogea</i> L.) remains sparse. We identified 122 <i>AhSBT</i> genes in the STQ peanut genome, classifying them into six subgroups based on phylogenetic analysis. Detailed structural and motif analyses revealed the presence of conserved domains, highlighting the evolutionary conservation of <i>AhSBTs</i>. The collinearity results indicate that the <i>A. hypogea SBT</i> gene family has 17, 5, and 1 homologous gene pairs with <i>Glycine max</i>, <i>Arabidopsis thaliana</i>, and <i>Zea mays</i>, respectively. Furthermore, the prediction of <i>cis</i>-elements in promoters indicates that they are mainly associated with hormones and abiotic stress. GO and KEGG analyses showed that many <i>AhSBTs</i> are important in stress response. Based on transcriptome datasets, some genes, such as <i>AhSBT2</i>, <i>AhSBT18</i>, <i>AhSBT19</i>, <i>AhSBT60</i>, <i>AhSBT102, AhSBT5, AhSBT111</i>, and <i>AhSBT113</i>, showed remarkably higher expression in diverse tissues/organs, i.e., embryo, root, and leaf, potentially implicating them in seed development. Likewise, only a few genes, including <i>AhSBT1</i>, <i>AhSBT39</i>, <i>AhSBT53</i>, <i>AhSBT92</i>, and <i>AhSBT115</i>, were upregulated under abiotic stress (drought and cold) and phytohormone (ethylene, abscisic acid, paclobutrazol, brassinolide, and salicylic acid) treatments. Upon inoculation with <i>Ralstonia solanacearum</i>, the expression levels of <i>AhSBT39</i>, <i>AhSBT50</i>, <i>AhSBT92</i>, and <i>AhSBT115</i> were upregulated in disease-resistant and downregulated in disease-susceptible varieties. qRT-PCR-based expression profiling presented the parallel expression trends as generated from transcriptome datasets. The comprehensive dataset generated in the study provides valuable insights into understanding the functional roles of <i>AhSBTs</i>, paving the way for potential applications in crop improvement. These findings deepen our understanding of peanut molecular biology and offer new strategies for enhancing stress tolerance and other agronomically important traits.

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Journal
International Journal of Molecular Sciences
Published
2024-12-13
DOI
https://doi.org/10.3390/ijms252413361
Citations
3
Primary Topic
Peanut Plant Research Studies
Type
article
Field-Weighted Citation Impact
1.80

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article

Genome-Wide Identification, Functional Characterization, and Stress-Responsive Expression Profiling of Subtilase (SBT) Gene Family in Peanut (Arachis hypogaea L.)

Yuhui Zhuang, Shipeng Li, Huiwen Fu, Yasir Sharif et al.
3 citations
International Journal of Molecular Sciences
Peanut Plant Research Studies
1.80
article

Genome-Wide Identification, Functional Characterization, and Stress-Responsive Expression Profiling of Subtilase (SBT) Gene Family in Peanut (Arachis hypogaea L.)

Yuhui Zhuang, Shipeng Li, Huiwen Fu, Yasir Sharif, Yongli Zhang, Sheidu Abdullaziz, Lihui Wang
article en
3 citations

Abstract

Subtilases (SBTs), known as serine proteases or phytoproteases in plants, are crucial enzymes involved in plant development, growth, and signaling pathways. Despite their recognized importance in other plant species, information regarding their functional roles in cultivated peanut (<i>Arachis hypogea</i> L.) remains sparse. We identified 122 <i>AhSBT</i> genes in the STQ peanut genome, classifying them into six subgroups based on phylogenetic analysis. Detailed structural and motif analyses revealed the presence of conserved domains, highlighting the evolutionary conservation of <i>AhSBTs</i>. The collinearity results indicate that the <i>A. hypogea SBT</i> gene family has 17, 5, and 1 homologous gene pairs with <i>Glycine max</i>, <i>Arabidopsis thaliana</i>, and <i>Zea mays</i>, respectively. Furthermore, the prediction of <i>cis</i>-elements in promoters indicates that they are mainly associated with hormones and abiotic stress. GO and KEGG analyses showed that many <i>AhSBTs</i> are important in stress response. Based on transcriptome datasets, some genes, such as <i>AhSBT2</i>, <i>AhSBT18</i>, <i>AhSBT19</i>, <i>AhSBT60</i>, <i>AhSBT102, AhSBT5, AhSBT111</i>, and <i>AhSBT113</i>, showed remarkably higher expression in diverse tissues/organs, i.e., embryo, root, and leaf, potentially implicating them in seed development. Likewise, only a few genes, including <i>AhSBT1</i>, <i>AhSBT39</i>, <i>AhSBT53</i>, <i>AhSBT92</i>, and <i>AhSBT115</i>, were upregulated under abiotic stress (drought and cold) and phytohormone (ethylene, abscisic acid, paclobutrazol, brassinolide, and salicylic acid) treatments. Upon inoculation with <i>Ralstonia solanacearum</i>, the expression levels of <i>AhSBT39</i>, <i>AhSBT50</i>, <i>AhSBT92</i>, and <i>AhSBT115</i> were upregulated in disease-resistant and downregulated in disease-susceptible varieties. qRT-PCR-based expression profiling presented the parallel expression trends as generated from transcriptome datasets. The comprehensive dataset generated in the study provides valuable insights into understanding the functional roles of <i>AhSBTs</i>, paving the way for potential applications in crop improvement. These findings deepen our understanding of peanut molecular biology and offer new strategies for enhancing stress tolerance and other agronomically important traits.

International Journal of Molecular SciencesVol. 25(24)
Nasarawa State University (NG), Fujian Agriculture and Forestry University (CN)
National Natural Science Foundation of China, Fujian Agriculture and Forestry University, National Key Research and Development Program of China
Life in Land
Openalex Percentile: Top 12%
Peanut Plant Research Studies
1.80
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