Amycolatopsis heterodermiae sp. nov. and Actinacidiphila polyblastidii sp. nov., two new actinobacteria isolated from foliose lichens

Two novel actinomycete strains, designated as V23-08 T and V4-01 T , were isolated from a foliose lichen collected in Doi Inthanon National Park, Chiang Mai Province, Thailand. Strain V23-08 T showed the highest similarity (98.40%) to Amycolatopsis tolypomycina DSM 44544 T . Similarly, strain V4-01 T showed the highest 16S rRNA gene similarity relatedness (98.89%) to Actinacidiphila acidipaludis PLK6-54 T . Chemotaxonomic analysis revealed distinct characteristics for each strain. The isomers of diaminopimelic acid were identified as meso -DAP in strain V23-08 T and ll -DAP in strain V4-01 T . The predominant menaquinones were MK-9(H 2 ) for strain V23-08 T and MK-9(H 6 ) and MK-9(H 8 ) for strain V4-01 T . Strain V23-08 T contained mannose, glucose, galactose and arabinose as whole-cell sugars, with iso -C 16:0 as the major fatty acid. The polar lipid profile included diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, unidentified aminophospholipids, unidentified phospholipids and unidentified lipids. In contrast, strain V4-01 T exhibited glucose and galactose as whole-cell sugars, with iso -C 16:0 , anteiso -C 16:0 and C 16:0 as major fatty acids, and a polar lipid composition of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The taxonomic data, supported by digital DNA–DNA hybridization and average nucleotide identity analyses, confirm that strains V23-08 T and V4-01 T represent novel species within the genera Amycolatopsis and Actinacidiphila , respectively. Based on these findings, the names Amycolatopsis heterodermiae sp. nov. (strain V23-08 T : TBRC 16208 T and NBRC 115837 T ) and Actinacidiphila polyblastidii sp. nov. (strain V4-01 T : TBRC 16209 T and NBRC 115865 T ) are proposed.

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2024-12-11
DOI
https://doi.org/10.1099/ijsem.0.006598
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1
Primary Topic
Genomics and Phylogenetic Studies
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article

Amycolatopsis heterodermiae sp. nov. and Actinacidiphila polyblastidii sp. nov., two new actinobacteria isolated from foliose lichens

Enjuro Harunari, Yasuhiro Igarashi, Paranee Sripreechasak, Chanwit Suriyachadkun et al.
1 citations
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
0.23
article

Amycolatopsis heterodermiae sp. nov. and Actinacidiphila polyblastidii sp. nov., two new actinobacteria isolated from foliose lichens

Enjuro Harunari, Yasuhiro Igarashi, Paranee Sripreechasak, Chanwit Suriyachadkun, Wetchasart Polyiam, Kawinnat Buaruang, Wongsakorn Phongsopitanun, Somboon Tanasupawat, Achiraya Somphong
article en
1 citations

Abstract

Two novel actinomycete strains, designated as V23-08 T and V4-01 T , were isolated from a foliose lichen collected in Doi Inthanon National Park, Chiang Mai Province, Thailand. Strain V23-08 T showed the highest similarity (98.40%) to Amycolatopsis tolypomycina DSM 44544 T . Similarly, strain V4-01 T showed the highest 16S rRNA gene similarity relatedness (98.89%) to Actinacidiphila acidipaludis PLK6-54 T . Chemotaxonomic analysis revealed distinct characteristics for each strain. The isomers of diaminopimelic acid were identified as meso -DAP in strain V23-08 T and ll -DAP in strain V4-01 T . The predominant menaquinones were MK-9(H 2 ) for strain V23-08 T and MK-9(H 6 ) and MK-9(H 8 ) for strain V4-01 T . Strain V23-08 T contained mannose, glucose, galactose and arabinose as whole-cell sugars, with iso -C 16:0 as the major fatty acid. The polar lipid profile included diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, unidentified aminophospholipids, unidentified phospholipids and unidentified lipids. In contrast, strain V4-01 T exhibited glucose and galactose as whole-cell sugars, with iso -C 16:0 , anteiso -C 16:0 and C 16:0 as major fatty acids, and a polar lipid composition of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. The taxonomic data, supported by digital DNA–DNA hybridization and average nucleotide identity analyses, confirm that strains V23-08 T and V4-01 T represent novel species within the genera Amycolatopsis and Actinacidiphila , respectively. Based on these findings, the names Amycolatopsis heterodermiae sp. nov. (strain V23-08 T : TBRC 16208 T and NBRC 115837 T ) and Actinacidiphila polyblastidii sp. nov. (strain V4-01 T : TBRC 16209 T and NBRC 115865 T ) are proposed.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 74(12)
Burapha University (TH), National Science and Technology Development Agency (TH), Chulalongkorn University (TH), Ramkhamhaeng University (TH), Toyama Prefectural University (JP), National Center for Genetic Engineering and Biotechnology (TH)
Life in Land
Openalex Percentile: Top 40%
Genomics and Phylogenetic Studies
0.23
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