QSAR Classification Modeling Using Machine Learning with a Consensus-Based Approach for Multivariate Chemical Hazard End Points

This study introduces an innovative computational approach using hybrid machine learning models to predict toxicity across eight critical end points: cardiac toxicity, inhalation toxicity, dermal toxicity, oral toxicity, skin irritation, skin sensitization, eye irritation, and respiratory irritation. Leveraging advanced cheminformatics tools, we extracted relevant features from curated data sets, incorporating a range of descriptors such as Morgan circular fingerprints, MACCS keys, Mordred calculation descriptors, and physicochemical properties. The consensus model was developed by selecting the best-performing classifier-Random Forest (RF), eXtreme Gradient Boosting (XGBoost), or Support Vector Machines (SVM)-for each descriptor, optimizing predictive accuracy and robustness across the end points. The model obtained strong predictive performance, with area under the curve (AUC) scores ranging from 0.78 to 0.90. This framework offers a reliable, ethical, and effective in silico approach to chemical safety assessment, underscoring the potential of advanced computational methods to support both regulatory and research applications in toxicity prediction.

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Publication Details

Journal
ACS Omega
Published
2024-12-12
DOI
https://doi.org/10.1021/acsomega.4c09356
Citations
18
Primary Topic
Computational Drug Discovery Methods
Type
article
Field-Weighted Citation Impact
6.51

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article

QSAR Classification Modeling Using Machine Learning with a Consensus-Based Approach for Multivariate Chemical Hazard End Points

Frederique J. Vanheusden, Muhammad Adnan Pramudito, Yunendah Nur Fuadah, Ki Moo Lim et al.
18 citations
ACS Omega
Computational Drug Discovery Methods
6.51
article

QSAR Classification Modeling Using Machine Learning with a Consensus-Based Approach for Multivariate Chemical Hazard End Points

Frederique J. Vanheusden, Muhammad Adnan Pramudito, Yunendah Nur Fuadah, Ki Moo Lim, Lulu Firdaus
article en
18 citations

Abstract

This study introduces an innovative computational approach using hybrid machine learning models to predict toxicity across eight critical end points: cardiac toxicity, inhalation toxicity, dermal toxicity, oral toxicity, skin irritation, skin sensitization, eye irritation, and respiratory irritation. Leveraging advanced cheminformatics tools, we extracted relevant features from curated data sets, incorporating a range of descriptors such as Morgan circular fingerprints, MACCS keys, Mordred calculation descriptors, and physicochemical properties. The consensus model was developed by selecting the best-performing classifier-Random Forest (RF), eXtreme Gradient Boosting (XGBoost), or Support Vector Machines (SVM)-for each descriptor, optimizing predictive accuracy and robustness across the end points. The model obtained strong predictive performance, with area under the curve (AUC) scores ranging from 0.78 to 0.90. This framework offers a reliable, ethical, and effective in silico approach to chemical safety assessment, underscoring the potential of advanced computational methods to support both regulatory and research applications in toxicity prediction.

ACS OmegaVol. 9(51)
Kumoh National Institute of Technology (KR), Nottingham Trent University (GB), Telkom University (ID)
National Research Foundation, Ministry of Food and Drug Safety, National Research Foundation of Korea, Ministry of Science and ICT, South Korea, Universitas Telkom, Institute for Information and Communications Technology Promotion, Direktorat Riset dan Pengabdian Masyarakat
Climate action
Openalex Percentile: Top 3%
Computational Drug Discovery Methods
6.51
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