XAI-ResUNet: analysing the impact of pre-training in ResUNet architectures for multiple sclerosis lesion segmentation using EigenGradCAM
Multiple Sclerosis (MS) is a chronic disease that causes lesions in the central nervous system. Diagnosing MS is a challenging process that strongly relies on Magnetic Resonance Imaging (MRI) and exhibits high and largely unexplained variability across patients. In this paper, we propose a novel XAI-ResUNet architecture by integrating ResNet-50 as an encoder in a U-Net-like architecture and demystifying the detection and segmentation process by incorporating EigenGradCAM into the encoder. We used the training and testing sets of the MSSEG-2016 dataset for our experiments. We compared three architectures with ResNet-50 pre-trained on ImageNet, RadImageNet, and without pre-training. Our preliminary results show that ResNet-50 pre-trained on ImageNet outperforms the others, achieving a DSC of 0.638. We also demonstrate how pre-training on large image datasets can affect MS lesion detection and segmentation. Our code is publicly available at https://github.com/VishmiVishara/XAI-ResUNet.
Authors
- Claudia Mazo (ORCID: https://orcid.org/0000-0003-1703-8964)
- Prateek Mathur (ORCID: https://orcid.org/0000-0001-9588-8521)
- Julia Dietlmeier (ORCID: https://orcid.org/0000-0001-9980-0910)
- Oluwabukola Adegboro
- Vayangi Vishmi Vishara Ganepola
- Aonghus Lawlor (ORCID: https://orcid.org/0000-0002-6160-4639)
- Noel E. O’Connor
Institutions
- University College Dublin (IE)
- Data Fusion International (Ireland) (IE)
- Dublin City University (IE)
Publication Details
- Journal
- IET conference proceedings.
- Published
- 2024-10-01
- DOI
- https://doi.org/10.1049/icp.2024.3318
- Primary Topic
- Radiomics and Machine Learning in Medical Imaging
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- Science Foundation Ireland