XAI-ResUNet: analysing the impact of pre-training in ResUNet architectures for multiple sclerosis lesion segmentation using EigenGradCAM

Multiple Sclerosis (MS) is a chronic disease that causes lesions in the central nervous system. Diagnosing MS is a challenging process that strongly relies on Magnetic Resonance Imaging (MRI) and exhibits high and largely unexplained variability across patients. In this paper, we propose a novel XAI-ResUNet architecture by integrating ResNet-50 as an encoder in a U-Net-like architecture and demystifying the detection and segmentation process by incorporating EigenGradCAM into the encoder. We used the training and testing sets of the MSSEG-2016 dataset for our experiments. We compared three architectures with ResNet-50 pre-trained on ImageNet, RadImageNet, and without pre-training. Our preliminary results show that ResNet-50 pre-trained on ImageNet outperforms the others, achieving a DSC of 0.638. We also demonstrate how pre-training on large image datasets can affect MS lesion detection and segmentation. Our code is publicly available at https://github.com/VishmiVishara/XAI-ResUNet.

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Publication Details

Journal
IET conference proceedings.
Published
2024-10-01
DOI
https://doi.org/10.1049/icp.2024.3318
Primary Topic
Radiomics and Machine Learning in Medical Imaging
Type
article
Field-Weighted Citation Impact
0.00

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article

XAI-ResUNet: analysing the impact of pre-training in ResUNet architectures for multiple sclerosis lesion segmentation using EigenGradCAM

Claudia Mazo, Prateek Mathur, Julia Dietlmeier, Oluwabukola Adegboro et al.
IET conference proceedings.
Radiomics and Machine Learning in Medical Imaging
article

XAI-ResUNet: analysing the impact of pre-training in ResUNet architectures for multiple sclerosis lesion segmentation using EigenGradCAM

Claudia Mazo, Prateek Mathur, Julia Dietlmeier, Oluwabukola Adegboro, Vayangi Vishmi Vishara Ganepola, Aonghus Lawlor, Noel E. O’Connor
article en

Abstract

Multiple Sclerosis (MS) is a chronic disease that causes lesions in the central nervous system. Diagnosing MS is a challenging process that strongly relies on Magnetic Resonance Imaging (MRI) and exhibits high and largely unexplained variability across patients. In this paper, we propose a novel XAI-ResUNet architecture by integrating ResNet-50 as an encoder in a U-Net-like architecture and demystifying the detection and segmentation process by incorporating EigenGradCAM into the encoder. We used the training and testing sets of the MSSEG-2016 dataset for our experiments. We compared three architectures with ResNet-50 pre-trained on ImageNet, RadImageNet, and without pre-training. Our preliminary results show that ResNet-50 pre-trained on ImageNet outperforms the others, achieving a DSC of 0.638. We also demonstrate how pre-training on large image datasets can affect MS lesion detection and segmentation. Our code is publicly available at https://github.com/VishmiVishara/XAI-ResUNet.

IET conference proceedings.Vol. 2024(10)
University College Dublin (IE), Data Fusion International (Ireland) (IE), Dublin City University (IE)
Science Foundation Ireland
Openalex Percentile: Top 61%
Radiomics and Machine Learning in Medical Imaging
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XAI-ResUNet: analysing the impact of pre-training in ResUNet architectures for multiple sclerosis lesion segmentation using EigenGradCAM — Claudia Mazo, Prateek Mathur, et al. · IET conference proceedings. (2024) | TGRS Research Map | TGRS