Effects of allosteric effectors on oxygen binding to crystals of hemoglobin in the R‐quaternary structure

Much is known about how allosteric effectors influence the equilibrium between the relaxed (R) and tense (T) states of hemoglobin (Hb), but little is known about how and to what extent the effectors lower the intrinsic O<sub>2</sub> affinity of each allosteric state, especially the R-state. Here, we provide a thorough characterization of the O<sub>2</sub> equilibria of effector-bound and unbound R-quaternary form crystals of horse Hb without a quaternary structural switching. In the absence of effectors, R crystals of horse Hb were shown to bind O<sub>2</sub> noncooperatively with a very high affinity virtually identical to that of R crystals of human Hb. We found that the effector bezafibrate (BZF) and its derivative L35 lower the overall O<sub>2</sub> affinity of R crystals by approximately a factor of 3 and 2, respectively, while both maintaining noncooperative oxygenation. These effects are observed regardless of whether the effectors are co-crystallized or soaked into the effector-free protein crystals with a different lattice, confirming that the observed affinity reduction is induced by the BZF derivatives and not by crystal packing forces. Our findings, combined with available co-crystal structural data, suggest that the BZF derivatives lower the O<sub>2</sub> affinity of the R-quaternary structure of Hb through structural constraints imposed by a quaternary shift slightly toward T. Additionally, since no co-crystal of R-state Hb with the effector inositol hexakisphosphate (IHP) is available, we only present an IHP-soaking experiment showing little change in O<sub>2</sub> affinity, and poor IHP binding to the R crystal structure of horse Hb is suggested.

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Journal
Protein Science
Published
2024-12-11
DOI
https://doi.org/10.1002/pro.5232
Primary Topic
Hemoglobin structure and function
Type
article
Field-Weighted Citation Impact
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article

Effects of allosteric effectors on oxygen binding to crystals of hemoglobin in the R‐quaternary structure

Naoya Shibayama
Protein Science
Hemoglobin structure and function
article

Effects of allosteric effectors on oxygen binding to crystals of hemoglobin in the R‐quaternary structure

Naoya Shibayama
article en

Abstract

Much is known about how allosteric effectors influence the equilibrium between the relaxed (R) and tense (T) states of hemoglobin (Hb), but little is known about how and to what extent the effectors lower the intrinsic O<sub>2</sub> affinity of each allosteric state, especially the R-state. Here, we provide a thorough characterization of the O<sub>2</sub> equilibria of effector-bound and unbound R-quaternary form crystals of horse Hb without a quaternary structural switching. In the absence of effectors, R crystals of horse Hb were shown to bind O<sub>2</sub> noncooperatively with a very high affinity virtually identical to that of R crystals of human Hb. We found that the effector bezafibrate (BZF) and its derivative L35 lower the overall O<sub>2</sub> affinity of R crystals by approximately a factor of 3 and 2, respectively, while both maintaining noncooperative oxygenation. These effects are observed regardless of whether the effectors are co-crystallized or soaked into the effector-free protein crystals with a different lattice, confirming that the observed affinity reduction is induced by the BZF derivatives and not by crystal packing forces. Our findings, combined with available co-crystal structural data, suggest that the BZF derivatives lower the O<sub>2</sub> affinity of the R-quaternary structure of Hb through structural constraints imposed by a quaternary shift slightly toward T. Additionally, since no co-crystal of R-state Hb with the effector inositol hexakisphosphate (IHP) is available, we only present an IHP-soaking experiment showing little change in O<sub>2</sub> affinity, and poor IHP binding to the R crystal structure of horse Hb is suggested.

Protein ScienceVol. 34(1)
Jichi Medical University (JP)
Japan Society for the Promotion of Science
Openalex Percentile: Top 76%
Hemoglobin structure and function
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