Stabilizing Tensor Voting for 3D Curvature Estimation

Curvature plays an important role in the function of biological membranes, and is therefore a readout of interest in microscopy data. The PyCurv library established itself as a valuable tool for curvature estimation in 3D microscopy images. However, in noisy images, the method exhibits visible instabilities, which are not captured by the standard error measures. In this article, we investigate the source of these instabilities, provide ade- quate measures to detect them, and introduce a novel post-processing step which corrects the errors. We illustrate the robustness of our enhanced method over various noise regimes and demonstrate that with our orientation correcting post-processing step, the PyCurv library becomes a truly stable tool for curvature quantification.

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Publication Details

Journal
EPiC series in computing
Published
2024-12-11
DOI
https://doi.org/10.29007/4nh8
Primary Topic
Medical Image Segmentation Techniques
Type
article
Field-Weighted Citation Impact
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article

Stabilizing Tensor Voting for 3D Curvature Estimation

Brigitte Forster, Víctor Pérez, Virginie Uhlmann
EPiC series in computing
Medical Image Segmentation Techniques
article

Stabilizing Tensor Voting for 3D Curvature Estimation

Brigitte Forster, Víctor Pérez, Virginie Uhlmann
article en

Abstract

Curvature plays an important role in the function of biological membranes, and is therefore a readout of interest in microscopy data. The PyCurv library established itself as a valuable tool for curvature estimation in 3D microscopy images. However, in noisy images, the method exhibits visible instabilities, which are not captured by the standard error measures. In this article, we investigate the source of these instabilities, provide ade- quate measures to detect them, and introduce a novel post-processing step which corrects the errors. We illustrate the robustness of our enhanced method over various noise regimes and demonstrate that with our orientation correcting post-processing step, the PyCurv library becomes a truly stable tool for curvature quantification.

EPiC series in computingVol. 104
Openalex Percentile: Top 78%
Medical Image Segmentation Techniques
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