Implementation of Automatic Segmentation Framework as Preprocessing Step for Radiomics Analysis of Lung Anatomical Districts

Background: The advent of artificial intelligence has significantly impacted radiology, with radiomics emerging as a transformative approach that extracts quantitative data from medical images to improve diagnostic and therapeutic accuracy. This study aimed to enhance the radiomic workflow by applying deep learning, through transfer learning, for the automatic segmentation of lung regions in computed tomography scans as a preprocessing step. Methods: Leveraging a pipeline articulated in (i) patient-based data splitting, (ii) intensity normalization, (iii) voxel resampling, (iv) bed removal, (v) contrast enhancement and (vi) model training, a DeepLabV3+ convolutional neural network (CNN) was fine tuned to perform whole-lung-region segmentation. Results: The trained model achieved high accuracy, Dice coefficient (0.97) and BF (93.06%) scores, and it effectively preserved lung region areas and removed confounding anatomical regions such as the heart and the spine. Conclusions: This study introduces a deep learning framework for the automatic segmentation of lung regions in CT images, leveraging an articulated pipeline and demonstrating excellent performance of the model, effectively isolating lung regions while excluding confounding anatomical structures. Ultimately, this work paves the way for more efficient, automated preprocessing tools in lung cancer detection, with potential to significantly improve clinical decision making and patient outcomes.

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Institutions

Publication Details

Journal
BioMedInformatics
Published
2024-12-11
DOI
https://doi.org/10.3390/biomedinformatics4040125
Citations
3
Primary Topic
Radiomics and Machine Learning in Medical Imaging
Type
article
Field-Weighted Citation Impact
1.21
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article

Implementation of Automatic Segmentation Framework as Preprocessing Step for Radiomics Analysis of Lung Anatomical Districts

Giovanni Pasini, Alessandro Stefano, Franco Marinozzi, Giorgio Ivan Russo et al.
3 citations
BioMedInformatics
Radiomics and Machine Learning in Medical Imaging
1.21
article

Implementation of Automatic Segmentation Framework as Preprocessing Step for Radiomics Analysis of Lung Anatomical Districts

Giovanni Pasini, Alessandro Stefano, Franco Marinozzi, Giorgio Ivan Russo, Fabiano Bini, Nicolò Lauciello
article en
3 citations

Abstract

Background: The advent of artificial intelligence has significantly impacted radiology, with radiomics emerging as a transformative approach that extracts quantitative data from medical images to improve diagnostic and therapeutic accuracy. This study aimed to enhance the radiomic workflow by applying deep learning, through transfer learning, for the automatic segmentation of lung regions in computed tomography scans as a preprocessing step. Methods: Leveraging a pipeline articulated in (i) patient-based data splitting, (ii) intensity normalization, (iii) voxel resampling, (iv) bed removal, (v) contrast enhancement and (vi) model training, a DeepLabV3+ convolutional neural network (CNN) was fine tuned to perform whole-lung-region segmentation. Results: The trained model achieved high accuracy, Dice coefficient (0.97) and BF (93.06%) scores, and it effectively preserved lung region areas and removed confounding anatomical regions such as the heart and the spine. Conclusions: This study introduces a deep learning framework for the automatic segmentation of lung regions in CT images, leveraging an articulated pipeline and demonstrating excellent performance of the model, effectively isolating lung regions while excluding confounding anatomical structures. Ultimately, this work paves the way for more efficient, automated preprocessing tools in lung cancer detection, with potential to significantly improve clinical decision making and patient outcomes.

BioMedInformaticsVol. 4(4)
National Research Council (IT), Sapienza University of Rome (IT)
Peace, Justice and strong institutions
Openalex Percentile: Top 19%
Radiomics and Machine Learning in Medical Imaging
1.21
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Implementation of Automatic Segmentation Framework as Preprocessing Step for Radiomics Analysis of Lung Anatomical Districts — Giovanni Pasini, Alessandro Stefano, et al. · BioMedInformatics (2024) | TGRS Research Map | TGRS