Drosophila kikkawai ortholog of the D. melanogaster Muller D element ash1

The <i>Drosophila kikkawai</i> feature with Gene ID 108083276 was determined to be an ortholog of <i>Drosophila melanogaster</i> absent, small, or homeotic discs 1 ( <i>ash1</i> ). Two isoforms, ash1-PB and ash1-PC, were constructed on the <i>D. kikkawai</i> Muller D element using the GEP annotation protocol. The second coding exon of <i>D. kikkawai</i> <i>ash1</i> includes an insertion translated into 18 additional amino acids compared to the <i>D. melanogaster</i> protein and is supported by RNA-Seq coverage, the lack of splice junction predictions, and multiple gene predictors. The first intron in both isoforms of <i>D. kikkawaiash1</i> contains a well conserved non-canonical GC splice site.

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Journal
PubMed
Published
2024-08-11
DOI
https://doi.org/10.17912/micropub.biology.001322
Primary Topic
Chemistry and Stereochemistry Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Drosophila kikkawai ortholog of the D. melanogaster Muller D element ash1

Cindy Arrigo, Kayla Chambers, Claude L Rhyne, James E. J. Bedard et al.
PubMed
Chemistry and Stereochemistry Studies
article

Drosophila kikkawai ortholog of the D. melanogaster Muller D element ash1

Cindy Arrigo, Kayla Chambers, Claude L Rhyne, James E. J. Bedard, John Stanga, Larissa LoBello, Mia Mo, A. Nichols, Destiny Sabb, Kacie Kershaw, Cameron Welles, Joshua Kurucz
article en

Abstract

The <i>Drosophila kikkawai</i> feature with Gene ID 108083276 was determined to be an ortholog of <i>Drosophila melanogaster</i> absent, small, or homeotic discs 1 ( <i>ash1</i> ). Two isoforms, ash1-PB and ash1-PC, were constructed on the <i>D. kikkawai</i> Muller D element using the GEP annotation protocol. The second coding exon of <i>D. kikkawai</i> <i>ash1</i> includes an insertion translated into 18 additional amino acids compared to the <i>D. melanogaster</i> protein and is supported by RNA-Seq coverage, the lack of splice junction predictions, and multiple gene predictors. The first intron in both isoforms of <i>D. kikkawaiash1</i> contains a well conserved non-canonical GC splice site.

PubMedVol. 2024
Mercer University (US), University of the Fraser Valley (CA), Washington University in St. Louis (US), New Jersey City University (US)
National Science Foundation, National Institutes of Health, National Institute of General Medical Sciences
Openalex Percentile: Top 83%
Chemistry and Stereochemistry Studies
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