Chromosome-level Genome Assembly and Annotation of the Arctic Moss <i>Ptychostomum knowltonii</i>

The polar regions host a diverse array of moss species that have evolved to thrive in extreme environments. These mosses exhibit remarkable adaptations, including tolerance to freezing temperatures, desiccation, and ultraviolet radiation. Despite their ecological significance, genomic data on these organisms are still limited, impeding our understanding of their evolutionary history and adaptive mechanisms in the context of climate change. In this study, we present the first chromosome-scale genome assembly and annotation of the Arctic moss Ptychostomum knowltonii. The assembled genome is 408.8 Mb in size, anchored to 12 pseudochromosomes, with a scaffold N50 of 32.61 Mb. Repetitive elements account for 56.24% of the genome. The genome contains 28,014 protein-coding genes, with a BUSCO completeness of 96.20%. This genomic resource will enable future comparative genomic studies, enhancing our understanding of how polar mosses may respond to a warming climate and shedding light on their evolutionary trajectories in persistently extreme environments.

Authors

Institutions

Publication Details

Journal
Genome Biology and Evolution
Published
2024-12-10
DOI
https://doi.org/10.1093/gbe/evae268
Citations
2
Primary Topic
Bryophyte Studies and Records
Type
article
Field-Weighted Citation Impact
2.06
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Chromosome-level Genome Assembly and Annotation of the Arctic Moss Ptychostomum knowltonii

Shanshan Dong, Tao Peng, Dan Huang, Yang Liu et al.
2 citations
Genome Biology and Evolution
Bryophyte Studies and Records
2.06
article

Chromosome-level Genome Assembly and Annotation of the Arctic Moss Ptychostomum knowltonii

Shanshan Dong, Tao Peng, Dan Huang, Yang Liu, Li Zhang, Changling Ma, Yifeng Yao, Xuping Zhou
article en
2 citations

Abstract

The polar regions host a diverse array of moss species that have evolved to thrive in extreme environments. These mosses exhibit remarkable adaptations, including tolerance to freezing temperatures, desiccation, and ultraviolet radiation. Despite their ecological significance, genomic data on these organisms are still limited, impeding our understanding of their evolutionary history and adaptive mechanisms in the context of climate change. In this study, we present the first chromosome-scale genome assembly and annotation of the Arctic moss Ptychostomum knowltonii. The assembled genome is 408.8 Mb in size, anchored to 12 pseudochromosomes, with a scaffold N50 of 32.61 Mb. Repetitive elements account for 56.24% of the genome. The genome contains 28,014 protein-coding genes, with a BUSCO completeness of 96.20%. This genomic resource will enable future comparative genomic studies, enhancing our understanding of how polar mosses may respond to a warming climate and shedding light on their evolutionary trajectories in persistently extreme environments.

Genome Biology and EvolutionVol. 17(1)
Guizhou Normal University (CN), Chinese Academy of Sciences (CN), Beijing Botanical Garden (CN), Fairy Lake Botanical Garden (CN), Czech Academy of Sciences, Institute of Botany (CZ), Institute of Botany (CN), China National Botanical Garden
Climate action
Openalex Percentile: Top 11%
Bryophyte Studies and Records
2.06
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.