SuperSpot: coarse graining spatial transcriptomics data into metaspots
SuperSpot is an R package available at https://github.com/GfellerLab/SuperSpot and archived on Zenodo (https://doi.org/10.5281/zenodo.14222088). The code to reproduce the figures is available at https://github.com/GfellerLab/SuperSpot/tree/main/figures (https://doi.org/10.5281/zenodo.14222088).
Authors
- Aurélie AG Gabriel (ORCID: https://orcid.org/0000-0002-0606-3622)
- David Gfeller (ORCID: https://orcid.org/0000-0002-3952-0930)
- Léonard Hérault (ORCID: https://orcid.org/0000-0001-6499-2991)
- Matei Teleman (ORCID: https://orcid.org/0000-0001-7834-3992)
Institutions
- SIB Swiss Institute of Bioinformatics (CH)
- Ludwig Cancer Research (CH)
- Swiss Cancer Center Léman (CH)
- University of Lausanne (CH)
Publication Details
- Journal
- Bioinformatics
- Published
- 2024-12-06
- DOI
- https://doi.org/10.1093/bioinformatics/btae734
- Citations
- 2
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.47
Funders
- National Science Foundation
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung