Enzymatic Synthesis of Biologically Active H-Phosphinic Analogue of α-Ketoglutarate

Amino acid analogues with a phosphorus-containing moiety replacing the carboxylic group are promising sources of biologically active compounds. The <i>H</i>-phosphinic group, with hydrogen-phosphorus-carbon (H-P-C) bonds and a flattened tetrahedral configuration, is a bioisostere of the carboxylic group. Consequently, amino-<i>H</i>-phosphinic acids undergo substrate-like enzymatic transformations, leading to new biologically active metabolites. Previous studies employing NMR-based metabolomic and proteomic analyses show that in <i>Escherichia coli</i>, α-KG-γ-P<sub>H</sub> (the distal <i>H</i>-phosphinic analogue of α-ketoglutarate) can be converted into <i>L</i>-Glu-γ-P<sub>H</sub>. Notably, α-KG-γ-P<sub>H</sub> and <i>L</i>-Glu-γ-P<sub>H</sub> are antibacterial compounds, but their intracellular targets only partially overlap. <i>L</i>-Glu-γ-P<sub>H</sub> is known to be a substrate of aspartate transaminase and glutamate decarboxylase, but its substrate properties with NAD<sup>+</sup>-dependent glutamate dehydrogenase (GDH) have never been investigated. Compounds containing <i>P-H</i> bonds are strong reducing agents; therefore, enzymatic NAD<sup>+</sup>-dependent oxidation is not self-evident. Herein, we demonstrate that <i>L</i>-Glu-γ-P<sub>H</sub> is a substrate of eukaryotic GDH and that the pH optimum of <i>L</i>-Glu-γ-P<sub>H</sub> NAD<sup>+</sup>-dependent oxidative deamination is shifted to a slightly alkaline pH range compared to <i>L</i>-glutamate. By <sup>31</sup>P NMR, we observe that α-KG-γ-P<sub>H</sub> exists in a pH-dependent equilibrium of keto and germinal diol forms. Furthermore, the stereospecific enzymatic synthesis of α-KG-γ-P<sub>H</sub> from <i>L</i>-Glu-γ-P<sub>H</sub> using GDH is a possible route for its bio-based synthesis.

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Journal
Biomolecules
Published
2024-12-10
DOI
https://doi.org/10.3390/biom14121574
Citations
1
Primary Topic
Amino Acid Enzymes and Metabolism
Type
article
Field-Weighted Citation Impact
0.29

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article

Enzymatic Synthesis of Biologically Active H-Phosphinic Analogue of α-Ketoglutarate

Alex R. Khomutov, Sergey N. Kochetkov, Fabio Giovannercole, Yaroslav V. Tkachev et al.
1 citations
Biomolecules
Amino Acid Enzymes and Metabolism
0.29
article

Enzymatic Synthesis of Biologically Active H-Phosphinic Analogue of α-Ketoglutarate

Alex R. Khomutov, Sergey N. Kochetkov, Fabio Giovannercole, Yaroslav V. Tkachev, Elena N. Khurs, Dmitry V. Yanvarev, Daniela De Biase, М. А. Хомутов, Vsevolod L. Filonov, Artem V. Udod
article en
1 citations

Abstract

Amino acid analogues with a phosphorus-containing moiety replacing the carboxylic group are promising sources of biologically active compounds. The <i>H</i>-phosphinic group, with hydrogen-phosphorus-carbon (H-P-C) bonds and a flattened tetrahedral configuration, is a bioisostere of the carboxylic group. Consequently, amino-<i>H</i>-phosphinic acids undergo substrate-like enzymatic transformations, leading to new biologically active metabolites. Previous studies employing NMR-based metabolomic and proteomic analyses show that in <i>Escherichia coli</i>, α-KG-γ-P<sub>H</sub> (the distal <i>H</i>-phosphinic analogue of α-ketoglutarate) can be converted into <i>L</i>-Glu-γ-P<sub>H</sub>. Notably, α-KG-γ-P<sub>H</sub> and <i>L</i>-Glu-γ-P<sub>H</sub> are antibacterial compounds, but their intracellular targets only partially overlap. <i>L</i>-Glu-γ-P<sub>H</sub> is known to be a substrate of aspartate transaminase and glutamate decarboxylase, but its substrate properties with NAD<sup>+</sup>-dependent glutamate dehydrogenase (GDH) have never been investigated. Compounds containing <i>P-H</i> bonds are strong reducing agents; therefore, enzymatic NAD<sup>+</sup>-dependent oxidation is not self-evident. Herein, we demonstrate that <i>L</i>-Glu-γ-P<sub>H</sub> is a substrate of eukaryotic GDH and that the pH optimum of <i>L</i>-Glu-γ-P<sub>H</sub> NAD<sup>+</sup>-dependent oxidative deamination is shifted to a slightly alkaline pH range compared to <i>L</i>-glutamate. By <sup>31</sup>P NMR, we observe that α-KG-γ-P<sub>H</sub> exists in a pH-dependent equilibrium of keto and germinal diol forms. Furthermore, the stereospecific enzymatic synthesis of α-KG-γ-P<sub>H</sub> from <i>L</i>-Glu-γ-P<sub>H</sub> using GDH is a possible route for its bio-based synthesis.

BiomoleculesVol. 14(12)
Engelhardt Institute of Molecular Biology (RU), University of Namur (BE), Sapienza University of Rome (IT)
Sapienza Università di Roma, Russian Science Foundation
Clean water and sanitation
Openalex Percentile: Top 36%
Amino Acid Enzymes and Metabolism
0.29
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