Enzymatic Synthesis of Biologically Active H-Phosphinic Analogue of α-Ketoglutarate
Amino acid analogues with a phosphorus-containing moiety replacing the carboxylic group are promising sources of biologically active compounds. The <i>H</i>-phosphinic group, with hydrogen-phosphorus-carbon (H-P-C) bonds and a flattened tetrahedral configuration, is a bioisostere of the carboxylic group. Consequently, amino-<i>H</i>-phosphinic acids undergo substrate-like enzymatic transformations, leading to new biologically active metabolites. Previous studies employing NMR-based metabolomic and proteomic analyses show that in <i>Escherichia coli</i>, α-KG-γ-P<sub>H</sub> (the distal <i>H</i>-phosphinic analogue of α-ketoglutarate) can be converted into <i>L</i>-Glu-γ-P<sub>H</sub>. Notably, α-KG-γ-P<sub>H</sub> and <i>L</i>-Glu-γ-P<sub>H</sub> are antibacterial compounds, but their intracellular targets only partially overlap. <i>L</i>-Glu-γ-P<sub>H</sub> is known to be a substrate of aspartate transaminase and glutamate decarboxylase, but its substrate properties with NAD<sup>+</sup>-dependent glutamate dehydrogenase (GDH) have never been investigated. Compounds containing <i>P-H</i> bonds are strong reducing agents; therefore, enzymatic NAD<sup>+</sup>-dependent oxidation is not self-evident. Herein, we demonstrate that <i>L</i>-Glu-γ-P<sub>H</sub> is a substrate of eukaryotic GDH and that the pH optimum of <i>L</i>-Glu-γ-P<sub>H</sub> NAD<sup>+</sup>-dependent oxidative deamination is shifted to a slightly alkaline pH range compared to <i>L</i>-glutamate. By <sup>31</sup>P NMR, we observe that α-KG-γ-P<sub>H</sub> exists in a pH-dependent equilibrium of keto and germinal diol forms. Furthermore, the stereospecific enzymatic synthesis of α-KG-γ-P<sub>H</sub> from <i>L</i>-Glu-γ-P<sub>H</sub> using GDH is a possible route for its bio-based synthesis.
Authors
- Alex R. Khomutov (ORCID: https://orcid.org/0000-0001-6833-7855)
- Sergey N. Kochetkov (ORCID: https://orcid.org/0000-0002-7443-6961)
- Fabio Giovannercole (ORCID: https://orcid.org/0000-0003-0324-1398)
- Yaroslav V. Tkachev (ORCID: https://orcid.org/0000-0002-1583-9584)
- Elena N. Khurs
- Dmitry V. Yanvarev (ORCID: https://orcid.org/0000-0003-4660-1322)
- Daniela De Biase (ORCID: https://orcid.org/0000-0003-3536-9927)
- М. А. Хомутов (ORCID: https://orcid.org/0000-0003-2833-9834)
- Vsevolod L. Filonov
- Artem V. Udod
Institutions
- Engelhardt Institute of Molecular Biology (RU)
- University of Namur (BE)
- Sapienza University of Rome (IT)
Publication Details
- Journal
- Biomolecules
- Published
- 2024-12-10
- DOI
- https://doi.org/10.3390/biom14121574
- Citations
- 1
- Primary Topic
- Amino Acid Enzymes and Metabolism
- Type
- article
- Field-Weighted Citation Impact
- 0.29
Funders
- Sapienza Università di Roma
- Russian Science Foundation