Genome Sequencing and Metabolic Potential Analysis of Irpex lacteus

<i>Irpex lacteus</i> is an edible and medicinal macrofungus with significant biological activity and broad pharmaceutical prospects that has received increasing attention in recent years. Although it is an important resource for macrofungi, knowledge of it remains limited. In this study, we sequenced, de novo assembled, and annotated the whole genome of <i>I. lacteus</i> using a PacBio Sequel II sequencer. The assembled 41.83 Mb genome contains 13,135 predicted protein-coding genes, 83.44% of which have searchable sequence similarity to other genes available in public databases. Using genome-based bioinformatics analysis, we identified 556 enzymes involved in carbohydrate metabolism and 103 cytochrome P450 proteins. Genome annotation revealed genes for key enzymes responsible for the biosynthesis of secondary metabolites, such as terpenoids and polyketides. Among them, we identified 14 terpene synthases, 8 NRPS-like enzymes, and 4 polyketide synthases (PKS), as well as 2 clusters of biosynthetic genes presumably related to terpene synthesis in <i>I. lacteus</i>. Gene family analysis revealed that the MYB transcription factor gene family plays an important role in the growth and development of <i>I. lacteus</i>. This study further enriches the genomic content of <i>I. lacteus</i>, provides genomic information for further research on the molecular mechanism of <i>I. lacteus</i>, and promotes the development of <i>I. lacteus</i> in the fields of drug research and functional food production.

Authors

Institutions

Publication Details

Journal
Journal of Fungi
Published
2024-12-07
DOI
https://doi.org/10.3390/jof10120846
Citations
3
Primary Topic
Glycosylation and Glycoproteins Research
Type
article
Field-Weighted Citation Impact
0.70

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Genome Sequencing and Metabolic Potential Analysis of Irpex lacteus

Yingce Duan, Ying Ye, Chengwei Liu, Menghan Zhang et al.
3 citations
Journal of Fungi
Glycosylation and Glycoproteins Research
0.70
article

Genome Sequencing and Metabolic Potential Analysis of Irpex lacteus

Yingce Duan, Ying Ye, Chengwei Liu, Menghan Zhang, Wenli Li, Chaoqin Liang, Yue Wang
article en
3 citations

Abstract

<i>Irpex lacteus</i> is an edible and medicinal macrofungus with significant biological activity and broad pharmaceutical prospects that has received increasing attention in recent years. Although it is an important resource for macrofungi, knowledge of it remains limited. In this study, we sequenced, de novo assembled, and annotated the whole genome of <i>I. lacteus</i> using a PacBio Sequel II sequencer. The assembled 41.83 Mb genome contains 13,135 predicted protein-coding genes, 83.44% of which have searchable sequence similarity to other genes available in public databases. Using genome-based bioinformatics analysis, we identified 556 enzymes involved in carbohydrate metabolism and 103 cytochrome P450 proteins. Genome annotation revealed genes for key enzymes responsible for the biosynthesis of secondary metabolites, such as terpenoids and polyketides. Among them, we identified 14 terpene synthases, 8 NRPS-like enzymes, and 4 polyketide synthases (PKS), as well as 2 clusters of biosynthetic genes presumably related to terpene synthesis in <i>I. lacteus</i>. Gene family analysis revealed that the MYB transcription factor gene family plays an important role in the growth and development of <i>I. lacteus</i>. This study further enriches the genomic content of <i>I. lacteus</i>, provides genomic information for further research on the molecular mechanism of <i>I. lacteus</i>, and promotes the development of <i>I. lacteus</i> in the fields of drug research and functional food production.

Journal of FungiVol. 10(12)
Northeast Forestry University (CN), Huazhong University of Science and Technology (CN), Northwest A&F University (CN)
National Natural Science Foundation of China, Natural Science Foundation of Heilongjiang Province, Fundamental Research Funds for the Central Universities
Zero hunger
Openalex Percentile: Top 28%
Glycosylation and Glycoproteins Research
0.70
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.