Accurate computation of gas binding in the nanoscale porous organic cage CC3 via coupled cluster theory

This study investigates the binding of seven gas molecules-N<sub>2</sub>, CH<sub>4</sub>, C<sub>2</sub>H<sub>2</sub>, CO<sub>2</sub>, H<sub>2</sub>O, SF<sub>6</sub>, and CHCl<sub>3</sub>-within the central cavity of the nanoscale porous organic cage CC3, using a high-level local coupled cluster method that accounts for single, double, and perturbative triple excitations, extrapolated to the complete basis set limit. This results in the formation of the CC3@7 dataset, which presents unique challenges due to the need for accurate descriptions of confinement effects and many-body interactions that contribute to binding. The CC3@7 dataset is used to evaluate a variety of lower-cost computational approaches. Among the methods tested for accurately predicting the binding order for all seven gas molecules, the recommended MP2-based approach is MP2+<i>ai</i>D(CCD), which achieves a mean absolute error (MAE) of 0.4 kcal mol<sup>-1</sup>. For density functional theory (DFT) methods, B97M-V+<i>E</i><sup>ABC</sup>, B97M-V, M06-L-D3, B97M-rV+<i>E</i><sup>ABC</sup>, PBE0+D4, and PBE+D4 are recommended, with MAEs ranging from 0.3 to 0.4 kcal mol<sup>-1</sup>. Additionally, r<sup>2</sup>SCAN-3c and<i>ω</i>B97X-3c are identified as low-cost options, with MAEs of approximately 1 kcal mol<sup>-1</sup>. Considering both accuracy and stability, PBE0+D4 is recommended for investigating nanoscale host-guest bindings when only DFT methods are feasible. Furthermore, PBE0+D4 has been successfully applied to study the binding of additional atoms and hindered solvent molecules, demonstrating the flexibility of the CC3 cage to accommodate larger molecules that exceed its cavity size.

Authors

Institutions

Publication Details

Journal
Nanotechnology
Published
2024-12-06
DOI
https://doi.org/10.1088/1361-6528/ad9b33
Citations
5
Primary Topic
Advanced Chemical Physics Studies
Type
article
Field-Weighted Citation Impact
1.69

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Accurate computation of gas binding in the nanoscale porous organic cage CC3 via coupled cluster theory

Ka Un Lao
5 citations
Nanotechnology
Advanced Chemical Physics Studies
1.69
article

Accurate computation of gas binding in the nanoscale porous organic cage CC3 via coupled cluster theory

Ka Un Lao
article en
5 citations

Abstract

This study investigates the binding of seven gas molecules-N<sub>2</sub>, CH<sub>4</sub>, C<sub>2</sub>H<sub>2</sub>, CO<sub>2</sub>, H<sub>2</sub>O, SF<sub>6</sub>, and CHCl<sub>3</sub>-within the central cavity of the nanoscale porous organic cage CC3, using a high-level local coupled cluster method that accounts for single, double, and perturbative triple excitations, extrapolated to the complete basis set limit. This results in the formation of the CC3@7 dataset, which presents unique challenges due to the need for accurate descriptions of confinement effects and many-body interactions that contribute to binding. The CC3@7 dataset is used to evaluate a variety of lower-cost computational approaches. Among the methods tested for accurately predicting the binding order for all seven gas molecules, the recommended MP2-based approach is MP2+<i>ai</i>D(CCD), which achieves a mean absolute error (MAE) of 0.4 kcal mol<sup>-1</sup>. For density functional theory (DFT) methods, B97M-V+<i>E</i><sup>ABC</sup>, B97M-V, M06-L-D3, B97M-rV+<i>E</i><sup>ABC</sup>, PBE0+D4, and PBE+D4 are recommended, with MAEs ranging from 0.3 to 0.4 kcal mol<sup>-1</sup>. Additionally, r<sup>2</sup>SCAN-3c and<i>ω</i>B97X-3c are identified as low-cost options, with MAEs of approximately 1 kcal mol<sup>-1</sup>. Considering both accuracy and stability, PBE0+D4 is recommended for investigating nanoscale host-guest bindings when only DFT methods are feasible. Furthermore, PBE0+D4 has been successfully applied to study the binding of additional atoms and hindered solvent molecules, demonstrating the flexibility of the CC3 cage to accommodate larger molecules that exceed its cavity size.

NanotechnologyVol. 36(9)
Virginia Commonwealth University (US)
American Chemical Society Petroleum Research Fund
Openalex Percentile: Top 15%
Advanced Chemical Physics Studies
1.69
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.