Landscape-scale drivers of spatial dynamics and genetic diversity in an emerging wildlife pathogen

Aquatic pathogens often cannot tolerate drying, and thus their spread, and diversity across a landscape may depend on interactions between hydrological conditions and the movement of infected hosts. The aquatic fungus Batrachochytrium dendrobatidis (Bd) is a nearly ubiquitous pathogen of amphibians and particular lineages have been associated with host declines. By coupling amphibian surveys with molecular pathogen detection and genotyping techniques, we characterized the spatial dynamics and genetic diversity of Bd on a landscape containing both permanent and ephemeral ponds. In doing so, we aimed to clarify how pathogen loads and prevalences vary across seasons and among habitat types, and which host species move the pathogen from place to place. At the start of spring breeding, Bd prevalence was lower on amphibians sampled from ephemeral ponds. For the remainder of the amphibian active season, prevalence was similar across both ephemeral and permanent ponds, with variation in prevalence being well-explained by a hump-shaped relationship with host body temperature. The first amphibians to arrive at these ephemeral ponds infected were species that breed in ephemeral ponds and likely emerged infected from terrestrial hibernacula. However, species from permanent ponds, most of which hibernate aquatically, later visited the ephemeral ponds and these animals had a greater prevalence and load of Bd, suggesting that migrants among ponds and pond types also move Bd across the landscape. The Bd we sampled was genetically diverse within ponds but showed little genetic structure among ponds, host species, or seasons. Taken together, our findings suggest that Bd can be diverse even at small scales and moves readily across a landscape with help from a wide variety of hosts.