No reliable evidence supports the presence of the Javan tiger: data issues related to the DNA analysis of a recent hair sample

Abstract A recent study published in Oryx proposed that the extinct Javan tiger Panthera tigris sondaica may still survive on the Island of Java, Indonesia, based on mitochondrial DNA analysis of a single hair sample collected from a location where a tiger was reportedly encountered. However, upon reanalysing the genetic data presented in that study, we conclude that there is little support for this claim. The sequences of the putative tiger hair and Javan tiger museum specimens generated are not from tiger cytoplasmic mitochondrial DNA but more likely the nuclear pseudogene copies of mitochondrial DNA. In addition, the number of mismatches between the two Javan tiger sequences is unusually high for homologous sequences that are both from tigers, suggesting potential issues with data reliability. The paper provides insufficient details on quality control measures, making it impossible to rule out the possibility that errors were introduced during the analysis. Consequently, it is inappropriate to use the sequences presented in that study to infer the existence of the Javan tiger.

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Publication Details

Journal
Oryx
Published
2024-12-06
DOI
https://doi.org/10.1017/s0030605324001248
Citations
1
Primary Topic
Wildlife Ecology and Conservation
Type
article
Field-Weighted Citation Impact
0.46

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article

No reliable evidence supports the presence of the Javan tiger: data issues related to the DNA analysis of a recent hair sample

Xin Sun, Shu‐Jin Luo, Philip J. Nyhus, Haoran Xue et al.
1 citations
Oryx
Wildlife Ecology and Conservation
0.46
article

No reliable evidence supports the presence of the Javan tiger: data issues related to the DNA analysis of a recent hair sample

Xin Sun, Shu‐Jin Luo, Philip J. Nyhus, Haoran Xue, Nobuyuki Yamaguchi, Yue-Chen Liu, Zheng-Yan Sui
article en
1 citations

Abstract

Abstract A recent study published in Oryx proposed that the extinct Javan tiger Panthera tigris sondaica may still survive on the Island of Java, Indonesia, based on mitochondrial DNA analysis of a single hair sample collected from a location where a tiger was reportedly encountered. However, upon reanalysing the genetic data presented in that study, we conclude that there is little support for this claim. The sequences of the putative tiger hair and Javan tiger museum specimens generated are not from tiger cytoplasmic mitochondrial DNA but more likely the nuclear pseudogene copies of mitochondrial DNA. In addition, the number of mismatches between the two Javan tiger sequences is unusually high for homologous sequences that are both from tigers, suggesting potential issues with data reliability. The paper provides insufficient details on quality control measures, making it impossible to rule out the possibility that errors were introduced during the analysis. Consequently, it is inappropriate to use the sequences presented in that study to infer the existence of the Javan tiger.

OryxVol. 59(1)
University of Copenhagen (DK), Harvard University (US), Universiti Malaysia Terengganu (MY), University of Potsdam (DE), Peking University (CN), Colby College (US), University of Oxford (GB), State Key Laboratory of Plant Genomics (CN), Center for Life Sciences (CN), State Key Laboratory of Protein and Plant Gene Research
Panthera
Life below water
Openalex Percentile: Top 28%
Wildlife Ecology and Conservation
0.46
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