Machine learning based on multiplatform tests assists in subtype classification of mature B‐cell neoplasms

Mature B-cell neoplasms (MBNs) are clonal proliferative diseases encompassing over 40 subtypes. The WHO classification (morphology, immunology, cytogenetics and molecular biology) provides comprehensive diagnostic understandings. However, MBN subtyping relies heavily on the expertise of clinicians and pathologists, and differences in clinical experience can lead to variations in subtyping efficiency and consistency. Additionally, due to the diversity in genetic backgrounds, machine learning (ML) models constructed based on Western populations may not be suitable for Chinese MBN patients. To construct a highly accurate classification model suitable for Chinese MBN patients, we first developed an ML model based on next-generation sequencing (NGS) from Chinese MBN patients, with an accuracy of 0.719, which decreased to 0.707 after model feature selection. Another ML model based on NGS and tumour cell size had an accuracy of 0.715, which increased to 0.763 after model feature selection. Both models were more accurate than models constructed using Western MBN patient databases. Furthermore, by adding flow cytometry for CD5 and CD10, the accuracy reached 0.864, which further improved to 0.872 after model feature selection. These models are accessible via an open-access website. Overall, ML models incorporating multiplatform tests can serve as practical auxiliary tools for MBN subtype classification.

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Publication Details

Journal
British Journal of Haematology
Published
2024-12-03
DOI
https://doi.org/10.1111/bjh.19934
Primary Topic
Chronic Lymphocytic Leukemia Research
Type
article
Field-Weighted Citation Impact
0.00

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article

Machine learning based on multiplatform tests assists in subtype classification of mature B‐cell neoplasms

Jiecheng Yuan, Yafei Mu, Xijie Fan, Ren Yu-xia et al.
British Journal of Haematology
Chronic Lymphocytic Leukemia Research
article

Machine learning based on multiplatform tests assists in subtype classification of mature B‐cell neoplasms

Jiecheng Yuan, Yafei Mu, Xijie Fan, Ren Yu-xia, Yuhuan Meng, Jun-Wei Lin, Tao Chen, Lingling Liu, Jianhua Pan, Shihui Yu, Maoting Shen, Yuxin Chen
article en

Abstract

Mature B-cell neoplasms (MBNs) are clonal proliferative diseases encompassing over 40 subtypes. The WHO classification (morphology, immunology, cytogenetics and molecular biology) provides comprehensive diagnostic understandings. However, MBN subtyping relies heavily on the expertise of clinicians and pathologists, and differences in clinical experience can lead to variations in subtyping efficiency and consistency. Additionally, due to the diversity in genetic backgrounds, machine learning (ML) models constructed based on Western populations may not be suitable for Chinese MBN patients. To construct a highly accurate classification model suitable for Chinese MBN patients, we first developed an ML model based on next-generation sequencing (NGS) from Chinese MBN patients, with an accuracy of 0.719, which decreased to 0.707 after model feature selection. Another ML model based on NGS and tumour cell size had an accuracy of 0.715, which increased to 0.763 after model feature selection. Both models were more accurate than models constructed using Western MBN patient databases. Furthermore, by adding flow cytometry for CD5 and CD10, the accuracy reached 0.864, which further improved to 0.872 after model feature selection. These models are accessible via an open-access website. Overall, ML models incorporating multiplatform tests can serve as practical auxiliary tools for MBN subtype classification.

British Journal of HaematologyVol. 206(1)
Sun Yat-sen University (CN), Kingmed Diagnostics (CN), Third Affiliated Hospital of Sun Yat-sen University (CN), Guangzhou Medical University (CN)
Guangzhou Medical University, National Natural Science Foundation of China, Guangzhou Institute of Pediatrics, Guangzhou Women and Childrens Medical Center
Openalex Percentile: Top 61%
Chronic Lymphocytic Leukemia Research
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