Screening and Validation of Stable Reference Genes for qRT-PCR Analysis in Epicauta gorhami (Coleoptera: Meloidae)

<i>Epicauta gorhami</i> is a hypermetamorphic insect that mainly forage soybeans during the adult stage. However, the lack of appropriate references hinders our studying of the gene function in <i>E. gorhami</i>. In this study, referring to five computational tools (Ct value, geNorm, NormFinder, BestKeeper and RefFinder), the stability of 10 housekeeping genes (<i>GAPDH</i>, <i>ACT</i>, <i>RPL4</i>, <i>RPL27</i>, <i>α-TUB</i>, <i>RPS18</i>, <i>EF1α</i>, <i>RPS28</i>, <i>RPL13</i> and <i>SOD</i>) was assessed by qRT-PCR under three different conditions (adult ages, tissues/organs and temperatures). The findings suggested that <i>SOD</i> and <i>RPS18</i> were the most ideal references for examine gene transcripts among diverse adult ages and at various temperatures; a pair of <i>RPS18</i> and <i>RPS28</i> was the most reliable genes to assess gene expressions in diverse adult tissues. Finally, the relative expression levels of <i>EgUAP</i> were computed after normalization <i>RPS18</i> and <i>RPS28</i> with across diverse adult tissues. As expected, <i>EgUAP</i> expression was abundant in the foregut, trachea and antenna and scarce in the midgut, hindgut and epidermis. These findings will lay a solid foundation for analyzing the gene expression of <i>E. gorhami</i>.

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Publication Details

Journal
Insects
Published
2024-11-29
DOI
https://doi.org/10.3390/insects15120942
Primary Topic
Beetle Biology and Toxicology Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Screening and Validation of Stable Reference Genes for qRT-PCR Analysis in Epicauta gorhami (Coleoptera: Meloidae)

Guofeng Yang, Chen‐Hui Shen, Lin Jin, Yan Zhang et al.
Insects
Beetle Biology and Toxicology Studies
article

Screening and Validation of Stable Reference Genes for qRT-PCR Analysis in Epicauta gorhami (Coleoptera: Meloidae)

Guofeng Yang, Chen‐Hui Shen, Lin Jin, Yan Zhang, Jinhua Luo, Xiaofei Li, Huan‐Huan Zhang, Li Zhu, Xuetao Yu, Gang Wu, Yan Xiao-hong
article en

Abstract

<i>Epicauta gorhami</i> is a hypermetamorphic insect that mainly forage soybeans during the adult stage. However, the lack of appropriate references hinders our studying of the gene function in <i>E. gorhami</i>. In this study, referring to five computational tools (Ct value, geNorm, NormFinder, BestKeeper and RefFinder), the stability of 10 housekeeping genes (<i>GAPDH</i>, <i>ACT</i>, <i>RPL4</i>, <i>RPL27</i>, <i>α-TUB</i>, <i>RPS18</i>, <i>EF1α</i>, <i>RPS28</i>, <i>RPL13</i> and <i>SOD</i>) was assessed by qRT-PCR under three different conditions (adult ages, tissues/organs and temperatures). The findings suggested that <i>SOD</i> and <i>RPS18</i> were the most ideal references for examine gene transcripts among diverse adult ages and at various temperatures; a pair of <i>RPS18</i> and <i>RPS28</i> was the most reliable genes to assess gene expressions in diverse adult tissues. Finally, the relative expression levels of <i>EgUAP</i> were computed after normalization <i>RPS18</i> and <i>RPS28</i> with across diverse adult tissues. As expected, <i>EgUAP</i> expression was abundant in the foregut, trachea and antenna and scarce in the midgut, hindgut and epidermis. These findings will lay a solid foundation for analyzing the gene expression of <i>E. gorhami</i>.

InsectsVol. 15(12)
Nanjing Agricultural University (CN), Tibet Academy of Agricultural and Animal Husbandry Sciences (CN), Oil Crops Research Institute (CN), Enshi Tujia and Miao Autonomous Prefecture Academy of Agricultural Sciences (CN), Ministry of Agriculture and Rural Affairs (CN)
Chinese Academy of Agricultural Sciences
Life in Land
Openalex Percentile: Top 69%
Beetle Biology and Toxicology Studies
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