Leuconostoc aquikimchii sp. nov., a Lactic Acid Bacterium Isolated from Cabbage Watery Kimchi

Two Gram-stain-positive, facultatively anaerobic, non-hemolytic, coccoid-shaped bacterial strains, designated MS01<sup>T</sup> and MS02, were isolated from cabbage watery kimchi in the Republic of Korea. Cellular growth occurred at 5-25 ℃ (optimum, 20 ℃), pH 5-8 (optimum, pH 7) and in the presence of 0-5% (w/v) NaCl (optimum, 1%). Results of 16S rRNA gene-based phylogenetic analyses showed that strains MS01<sup>T</sup> and MS02 shared identical sequences, clustered within the Leuconostoc clade in phylogenetic trees, and were most closely related to Leuconostoc inhae IH003<sup>T</sup> and Leuconostoc gasicomitatum LMG 18811<sup>T</sup> with sequence similarities of 98.74%. The complete whole-genome sequences of strains MS01<sup>T</sup> and MS02 measured 2.04-2.06 Mbp and harbored a 50.6 kb plasmid, with DNA G + C contents of 37.7% for both. Based on average nucleotide identities (ANI) and digital DNA-DNA hybridization (dDDH) values, both strains were confirmed to belong to the same species but showed ≤ 85.9% ANI and ≤ 29.9% dDDH values to other Leuconostoc species, indicating that they represent a novel species. Metabolic pathway reconstruction revealed that both strains perform heterolactic acid fermentation, producing lactate, acetate, and ethanol. Chemotaxonomic analyses, including cellular fatty acids, polar lipids, and peptidoglycan amino acid, confirmed the inclusion of both strains within the genus Leuconostoc. Based on the phylogenetic, genomic, and phenotypic characterization, strains MS01<sup>T</sup> and MS02 were considered to represent a novel species within the genus Leuconostoc, for which the name Leuconostoc aquikimchii sp. nov. is proposed with MS01<sup>T</sup> (= KACC 23748<sup>T</sup> = JCM 37028<sup>T</sup>) as the type strain.

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Publication Details

Journal
The Journal of Microbiology
Published
2024-12-01
DOI
https://doi.org/10.1007/s12275-024-00188-z
Citations
2
Primary Topic
Genomics and Phylogenetic Studies
Type
article
Field-Weighted Citation Impact
0.47
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article

Leuconostoc aquikimchii sp. nov., a Lactic Acid Bacterium Isolated from Cabbage Watery Kimchi

Subin Kim, Se Hee Lee, Ki‐Hyun Kim, Misun Yun
2 citations
The Journal of Microbiology
Genomics and Phylogenetic Studies
0.47
article

Leuconostoc aquikimchii sp. nov., a Lactic Acid Bacterium Isolated from Cabbage Watery Kimchi

Subin Kim, Se Hee Lee, Ki‐Hyun Kim, Misun Yun
article en
2 citations

Abstract

Two Gram-stain-positive, facultatively anaerobic, non-hemolytic, coccoid-shaped bacterial strains, designated MS01<sup>T</sup> and MS02, were isolated from cabbage watery kimchi in the Republic of Korea. Cellular growth occurred at 5-25 ℃ (optimum, 20 ℃), pH 5-8 (optimum, pH 7) and in the presence of 0-5% (w/v) NaCl (optimum, 1%). Results of 16S rRNA gene-based phylogenetic analyses showed that strains MS01<sup>T</sup> and MS02 shared identical sequences, clustered within the Leuconostoc clade in phylogenetic trees, and were most closely related to Leuconostoc inhae IH003<sup>T</sup> and Leuconostoc gasicomitatum LMG 18811<sup>T</sup> with sequence similarities of 98.74%. The complete whole-genome sequences of strains MS01<sup>T</sup> and MS02 measured 2.04-2.06 Mbp and harbored a 50.6 kb plasmid, with DNA G + C contents of 37.7% for both. Based on average nucleotide identities (ANI) and digital DNA-DNA hybridization (dDDH) values, both strains were confirmed to belong to the same species but showed ≤ 85.9% ANI and ≤ 29.9% dDDH values to other Leuconostoc species, indicating that they represent a novel species. Metabolic pathway reconstruction revealed that both strains perform heterolactic acid fermentation, producing lactate, acetate, and ethanol. Chemotaxonomic analyses, including cellular fatty acids, polar lipids, and peptidoglycan amino acid, confirmed the inclusion of both strains within the genus Leuconostoc. Based on the phylogenetic, genomic, and phenotypic characterization, strains MS01<sup>T</sup> and MS02 were considered to represent a novel species within the genus Leuconostoc, for which the name Leuconostoc aquikimchii sp. nov. is proposed with MS01<sup>T</sup> (= KACC 23748<sup>T</sup> = JCM 37028<sup>T</sup>) as the type strain.

The Journal of MicrobiologyVol. 62(12)
Chonnam National University (KR), Gwangju Institute of Science and Technology (KR), World Institute of Kimchi (KR), Korea Research Institute of Bioscience and Biotechnology (KR)
Openalex Percentile: Top 34%
Genomics and Phylogenetic Studies
0.47
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