Deep learning model meets community-based surveillance of acute flaccid paralysis

Acute flaccid paralysis (AFP) case surveillance is pivotal for the early detection of potential poliovirus, particularly in endemic countries such as Ethiopia. The community-based surveillance system implemented in Ethiopia has significantly improved AFP surveillance. However, challenges like delayed detection and disorganized communication persist. This work proposes a simple deep learning model for AFP surveillance, leveraging transfer learning on images collected from Ethiopia's community key informants through mobile phones. The transfer learning approach is implemented using a vision transformer model pretrained on the ImageNet dataset. The proposed model outperformed convolutional neural network-based deep learning models and vision transformer models trained from scratch, achieving superior accuracy, F1-score, precision, recall, and area under the receiver operating characteristic curve (AUC). It emerged as the optimal model, demonstrating the highest average AUC of 0.870 ± 0.01. Statistical analysis confirmed the significant superiority of the proposed model over alternative approaches (<i>P</i> < 0.001). By bridging community reporting with health system response, this study offers a scalable solution for enhancing AFP surveillance in low-resource settings. The study is limited in terms of the quality of image data collected, necessitating future work on improving data quality. The establishment of a dedicated platform that facilitates data storage, analysis, and future learning can strengthen data quality. Nonetheless, this work represents a significant step toward leveraging artificial intelligence for community-based AFP surveillance from images, with substantial implications for addressing global health challenges and disease eradication strategies.

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Publication Details

Journal
Infectious Disease Modelling
Published
2024-12-03
DOI
https://doi.org/10.1016/j.idm.2024.12.002
Citations
2
Primary Topic
Viral Infections and Immunology Research
Type
article
Field-Weighted Citation Impact
0.80

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article

Deep learning model meets community-based surveillance of acute flaccid paralysis

Dessalew Yohannes, Kokeb Dese, Gelan Ayana, Se‐woon Choe et al.
2 citations
Infectious Disease Modelling
Viral Infections and Immunology Research
0.80
article

Deep learning model meets community-based surveillance of acute flaccid paralysis

Dessalew Yohannes, Kokeb Dese, Gelan Ayana, Se‐woon Choe, Jude Dzevela Kong, Hundessa Daba Nemomssa, Legesse Kidanne, Netsanet Workneh Gidi, Bontu Habtamu, Gashaw Demlew, Efrem Wakjira, Hamdia Murad, Filimona Bisrat, Tenager Tadesse, Ketema Lemma Abdi, Elbetel Taye
article en
2 citations

Abstract

Acute flaccid paralysis (AFP) case surveillance is pivotal for the early detection of potential poliovirus, particularly in endemic countries such as Ethiopia. The community-based surveillance system implemented in Ethiopia has significantly improved AFP surveillance. However, challenges like delayed detection and disorganized communication persist. This work proposes a simple deep learning model for AFP surveillance, leveraging transfer learning on images collected from Ethiopia's community key informants through mobile phones. The transfer learning approach is implemented using a vision transformer model pretrained on the ImageNet dataset. The proposed model outperformed convolutional neural network-based deep learning models and vision transformer models trained from scratch, achieving superior accuracy, F1-score, precision, recall, and area under the receiver operating characteristic curve (AUC). It emerged as the optimal model, demonstrating the highest average AUC of 0.870 ± 0.01. Statistical analysis confirmed the significant superiority of the proposed model over alternative approaches (<i>P</i> < 0.001). By bridging community reporting with health system response, this study offers a scalable solution for enhancing AFP surveillance in low-resource settings. The study is limited in terms of the quality of image data collected, necessitating future work on improving data quality. The establishment of a dedicated platform that facilitates data storage, analysis, and future learning can strengthen data quality. Nonetheless, this work represents a significant step toward leveraging artificial intelligence for community-based AFP surveillance from images, with substantial implications for addressing global health challenges and disease eradication strategies.

Infectious Disease ModellingVol. 10(1)
Kumoh National Institute of Technology (KR), Jimma University (ET), Ethiopian Public Health Institute (ET), Addis Ababa Science and Technology University (ET), Response Biomedical (Canada) (CA), Artificial Intelligence in Medicine (Canada) (CA)
International Development Research Centre, Foreign, Commonwealth and Development Office, Natural Sciences and Engineering Research Council of Canada
Openalex Percentile: Top 22%
Viral Infections and Immunology Research
0.80
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