De-identification is not enough: a comparison between de-identified and synthetic clinical notes

For sharing privacy-sensitive data, de-identification is commonly regarded as adequate for safeguarding privacy. Synthetic data is also being considered as a privacy-preserving alternative. Recent successes with numerical and tabular data generative models and the breakthroughs in large generative language models raise the question of whether synthetically generated clinical notes could be a viable alternative to real notes for research purposes. In this work, we demonstrated that (i) de-identification of real clinical notes does not protect records against a membership inference attack, (ii) proposed a novel approach to generate synthetic clinical notes using the current state-of-the-art large language models, (iii) evaluated the performance of the synthetically generated notes in a clinical domain task, and (iv) proposed a way to mount a membership inference attack where the target model is trained with synthetic data. We observed that when synthetically generated notes closely match the performance of real data, they also exhibit similar privacy concerns to the real data. Whether other approaches to synthetically generated clinical notes could offer better trade-offs and become a better alternative to sensitive real notes warrants further investigation.

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Publication Details

Journal
Scientific Reports
Published
2024-11-29
DOI
https://doi.org/10.1038/s41598-024-81170-y
Citations
17
Primary Topic
Privacy-Preserving Technologies in Data
Type
article
Field-Weighted Citation Impact
5.91

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article

De-identification is not enough: a comparison between de-identified and synthetic clinical notes

Atiquer Rahman Sarkar, Xiaoqian Jiang, Yao-Shun Chuang, Noman Mohammed
17 citations
Scientific Reports
Privacy-Preserving Technologies in Data
5.91
article

De-identification is not enough: a comparison between de-identified and synthetic clinical notes

Atiquer Rahman Sarkar, Xiaoqian Jiang, Yao-Shun Chuang, Noman Mohammed
article en
17 citations

Abstract

For sharing privacy-sensitive data, de-identification is commonly regarded as adequate for safeguarding privacy. Synthetic data is also being considered as a privacy-preserving alternative. Recent successes with numerical and tabular data generative models and the breakthroughs in large generative language models raise the question of whether synthetically generated clinical notes could be a viable alternative to real notes for research purposes. In this work, we demonstrated that (i) de-identification of real clinical notes does not protect records against a membership inference attack, (ii) proposed a novel approach to generate synthetic clinical notes using the current state-of-the-art large language models, (iii) evaluated the performance of the synthetically generated notes in a clinical domain task, and (iv) proposed a way to mount a membership inference attack where the target model is trained with synthetic data. We observed that when synthetically generated notes closely match the performance of real data, they also exhibit similar privacy concerns to the real data. Whether other approaches to synthetically generated clinical notes could offer better trade-offs and become a better alternative to sensitive real notes warrants further investigation.

Scientific ReportsVol. 14(1)
University of Manitoba (CA), The University of Texas Health Science Center at Houston (US)
National Science Foundation, Cancer Prevention and Research Institute of Texas, University of Manitoba, University of Texas Health Science Center at Houston, National Institutes of Health, Natural Sciences and Engineering Research Council of Canada
Peace, Justice and strong institutions
Openalex Percentile: Top 3%
Privacy-Preserving Technologies in Data
5.91
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