Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research
We intend to further build upon these existing tools to construct a scientist-friendly data resource and analytical ecosystem based on Findable, Accessible, Interoperable, and Reusable (FAIR) SC principles to facilitate SC-level genomic analysis through data ingestion, storage, retrieval, re-use, visualization, and comparative annotation across agricultural species.
Authors
- Marc Libault (ORCID: https://orcid.org/0000-0001-7419-9129)
- Tony Burdett
- Galabina Yordanova (ORCID: https://orcid.org/0000-0002-0329-6922)
- Christopher K. Tuggle (ORCID: https://orcid.org/0000-0002-4229-5316)
- Irene Papatheodorou (ORCID: https://orcid.org/0000-0001-7270-5470)
- Timothy L. Tickle (ORCID: https://orcid.org/0000-0002-6592-6272)
- Peter W. Harrison (ORCID: https://orcid.org/0000-0002-4007-2899)
- E Ventura
- Wesley C. Warren (ORCID: https://orcid.org/0000-0003-2255-2730)
- Benjamin Cole (ORCID: https://orcid.org/0000-0001-9652-624X)
- James Eugene Koltes (ORCID: https://orcid.org/0000-0003-1897-5685)
- Doreen Ware (ORCID: https://orcid.org/0000-0002-8125-3821)
- Nancy George
- Alexey Sokolov (ORCID: https://orcid.org/0000-0002-3387-0649)
- Nicholas J. Provart (ORCID: https://orcid.org/0000-0001-5551-7232)
- Amy T Walsh (ORCID: https://orcid.org/0009-0001-1482-2270)
- Muskan Kapoor (ORCID: https://orcid.org/0000-0003-2276-8312)
- Sunita Kumari (ORCID: https://orcid.org/0000-0001-9166-1450)
- Christine G. Elsik (ORCID: https://orcid.org/0000-0002-4248-7713)
Institutions
- Broad Institute (US)
- University of East Anglia (GB)
- European Bioinformatics Institute (GB)
- Lawrence Berkeley National Laboratory (US)
- Iowa State University (US)
- University of Toronto (CA)
- Joint Genome Institute (US)
- Cornell University (US)
- Cold Spring Harbor Laboratory (US)
- Norwich Research Park (GB)
- Earlham Institute (GB)
- Robert W. Holley Center for Agriculture & Health (US)
- University of Missouri (US)
Publication Details
- Journal
- Frontiers in Genetics
- Published
- 2024-11-29
- DOI
- https://doi.org/10.3389/fgene.2024.1460351
- Citations
- 2
- Primary Topic
- Research Data Management Practices
- Type
- article
- Field-Weighted Citation Impact
- 1.56
Funders
- Iowa State University
- National Institute of Food and Agriculture
- Biotechnology and Biological Sciences Research Council