Application of one-class classification using deep learning technique improves the classification of subvisible particles

Capturing subvisible particles using flow imaging microscopy is useful for evaluating protein aggregates that may induce immunogenicity. Automated labeling is desirable to distinguish harmless components such as silicone oil (SO) from subvisible particles. The one-class classifier, which requires only target class data for model establishment, is suitable for machine learning and proposes a useful solution for distinguishing a subject with heterogeneous but stable distributions, such as SO. However, the effectiveness of the application of one-class classifiers to subvisible particles remains unclear. In this study, we investigated whether deep learning techniques can improve the performance on a variety of images. We prepared datasets using SO and two types of protein aggregates: immunoglobulin G-derived aggregates (Agg<sub>IgG</sub>) and albumin-derived aggregates (Agg<sub>Alb</sub>). The deep-learning technique improved the classification scores for both Agg<sub>IgG</sub> and Agg<sub>Alb</sub>. The classification scores for Agg<sub>IgG</sub> were more satisfactory than those for Agg<sub>Alb</sub>. Cluster analysis revealed that one-class classification using deep learning techniques achieved excellent effectiveness across almost all clusters in classifying Agg<sub>IgG</sub>. Collectively, the deep learning technique remarkably improved the one-class classification of subvisible particles of Agg<sub>IgG</sub> and Agg<sub>Alb</sub>. Combined with deep learning, one-class classification can contribute to the evaluation of subvisible particles, particularly for Agg<sub>IgG</sub>.

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Publication Details

Journal
Journal of Pharmaceutical Sciences
Published
2024-11-29
DOI
https://doi.org/10.1016/j.xphs.2024.11.023
Citations
3
Primary Topic
Protein purification and stability
Type
article
Field-Weighted Citation Impact
0.70

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article

Application of one-class classification using deep learning technique improves the classification of subvisible particles

Sunao Maruyama, Yasushi Fujio, Takafumi Nakae, Sunao Hasegawa et al.
3 citations
Journal of Pharmaceutical Sciences
Protein purification and stability
0.70
article

Application of one-class classification using deep learning technique improves the classification of subvisible particles

Sunao Maruyama, Yasushi Fujio, Takafumi Nakae, Sunao Hasegawa, Masanori Obana, Toru Ogawa
article en
3 citations

Abstract

Capturing subvisible particles using flow imaging microscopy is useful for evaluating protein aggregates that may induce immunogenicity. Automated labeling is desirable to distinguish harmless components such as silicone oil (SO) from subvisible particles. The one-class classifier, which requires only target class data for model establishment, is suitable for machine learning and proposes a useful solution for distinguishing a subject with heterogeneous but stable distributions, such as SO. However, the effectiveness of the application of one-class classifiers to subvisible particles remains unclear. In this study, we investigated whether deep learning techniques can improve the performance on a variety of images. We prepared datasets using SO and two types of protein aggregates: immunoglobulin G-derived aggregates (Agg<sub>IgG</sub>) and albumin-derived aggregates (Agg<sub>Alb</sub>). The deep-learning technique improved the classification scores for both Agg<sub>IgG</sub> and Agg<sub>Alb</sub>. The classification scores for Agg<sub>IgG</sub> were more satisfactory than those for Agg<sub>Alb</sub>. Cluster analysis revealed that one-class classification using deep learning techniques achieved excellent effectiveness across almost all clusters in classifying Agg<sub>IgG</sub>. Collectively, the deep learning technique remarkably improved the one-class classification of subvisible particles of Agg<sub>IgG</sub> and Agg<sub>Alb</sub>. Combined with deep learning, one-class classification can contribute to the evaluation of subvisible particles, particularly for Agg<sub>IgG</sub>.

Journal of Pharmaceutical SciencesVol. 114(2)
Daiichi Sankyo (United Kingdom) (GB), Daiichi-Sankyo (Japan) (JP), The University of Osaka (JP)
Daiichi Sankyo Europe
Quality Education
Openalex Percentile: Top 29%
Protein purification and stability
0.70
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