Topicwise Separable Sentence Retrieval for Medical Report Generation

Automated radiology reporting holds immense clinical potential in alleviating the burdensome workload of radiologists and mitigating diagnostic bias. Recently, retrieval-based report generation methods have garnered increasing attention. These methods predefine a set of candidate queries and compose reports by searching for sentences in an off-the-shelf sentence gallery that best match these candidate queries. However, due to the long-tail distribution of the training data, these models tend to learn frequently occurring sentences and topics, overlooking the rare topics. Regrettably, in many cases, the descriptions of rare topics often indicate critical findings that should be mentioned in the report. To address this problem, we introduce a Topicwise Separable Sentence Retrieval (Teaser) for medical report generation. To ensure comprehensive learning of both common and rare topics, we categorize queries into common and rare types to learn differentiated topics, and then propose Topic Contrastive Loss to effectively align topics and queries in the latent space. Moreover, we integrate an Abstractor module following the extraction of visual features, which aids the topic decoder in gaining a deeper understanding of the visual observational intent. Experiments on the MIMIC-CXR and IU X-ray datasets demonstrate that Teaser surpasses state-of-the-art models, while also validating its capability to effectively represent rare topics and establish more dependable correspondences between queries and topics. The code is available at https://github.com/CindyZJT/Teaser.git.

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Publication Details

Journal
IEEE Transactions on Medical Imaging
Published
2024-11-28
DOI
https://doi.org/10.1109/tmi.2024.3507076
Citations
2
Primary Topic
Topic Modeling
Type
article
Field-Weighted Citation Impact
0.69
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article

Topicwise Separable Sentence Retrieval for Medical Report Generation

Liang Wan, Zhou Yang, Huazhu Fu, Junting Zhao et al.
2 citations
IEEE Transactions on Medical Imaging
Topic Modeling
0.69
article

Topicwise Separable Sentence Retrieval for Medical Report Generation

Liang Wan, Zhou Yang, Huazhu Fu, Junting Zhao, Zhihao Chen
article en
2 citations

Abstract

Automated radiology reporting holds immense clinical potential in alleviating the burdensome workload of radiologists and mitigating diagnostic bias. Recently, retrieval-based report generation methods have garnered increasing attention. These methods predefine a set of candidate queries and compose reports by searching for sentences in an off-the-shelf sentence gallery that best match these candidate queries. However, due to the long-tail distribution of the training data, these models tend to learn frequently occurring sentences and topics, overlooking the rare topics. Regrettably, in many cases, the descriptions of rare topics often indicate critical findings that should be mentioned in the report. To address this problem, we introduce a Topicwise Separable Sentence Retrieval (Teaser) for medical report generation. To ensure comprehensive learning of both common and rare topics, we categorize queries into common and rare types to learn differentiated topics, and then propose Topic Contrastive Loss to effectively align topics and queries in the latent space. Moreover, we integrate an Abstractor module following the extraction of visual features, which aids the topic decoder in gaining a deeper understanding of the visual observational intent. Experiments on the MIMIC-CXR and IU X-ray datasets demonstrate that Teaser surpasses state-of-the-art models, while also validating its capability to effectively represent rare topics and establish more dependable correspondences between queries and topics. The code is available at https://github.com/CindyZJT/Teaser.git.

IEEE Transactions on Medical ImagingVol. 44(3)
Agency for Science, Technology and Research (SG), Tianjin University (CN), Institute of High Performance Computing (SG)
Openalex Percentile: Top 23%
Topic Modeling
0.69
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