BeetRepeats: reference sequences for genome and polymorphism annotation in sugar beet and wild relatives
The BeetRepeats_v1.0 resource is a comprehensive compilation of all characterized repeat families, including satellite DNAs, ribosomal DNAs, transposable elements and endogenous viruses. The genomes covered are those of sugar beet and closely related wild beets (genera Beta and Patellifolia) as well as Chenopodium quinoa and Spinacia oleracea (all belonging to the Amaranthaceae). The reference sequences are in fasta format and comprise well-characterized repeats from both repeat categories (dispersed/mobile as well as tandemly arranged). The database is suitable for the RepeatMasker and RepeatExplorer2 pipelines and can be used directly for any repeat annotation and repeat polymorphism detection purposes.
Authors
- Gerhard Menzel (ORCID: https://orcid.org/0000-0002-8912-5162)
- Susan Liedtke
- Nicola J. Schmidt (ORCID: https://orcid.org/0000-0003-0038-9581)
- Daniela Holtgräwe (ORCID: https://orcid.org/0000-0002-1062-4576)
- Kathrin M. Seibt (ORCID: https://orcid.org/0000-0002-5435-2381)
- Bernd Weißhaar (ORCID: https://orcid.org/0000-0002-7635-3473)
- Tony Heitkam (ORCID: https://orcid.org/0000-0003-0168-8428)
- B. Weber (ORCID: https://orcid.org/0000-0003-4012-4430)
- Ludwig Mann (ORCID: https://orcid.org/0000-0001-8756-8106)
- Sarah Breitenbach
- Sophie Maiwald (ORCID: https://orcid.org/0000-0002-0716-648X)
Institutions
- Bielefeld University (DE)
- Technische Universität Dresden (DE)
- RWTH Aachen University (DE)
Publication Details
- Journal
- BMC Research Notes
- Published
- 2024-11-27
- DOI
- https://doi.org/10.1186/s13104-024-06993-4
- Citations
- 4
- Primary Topic
- Plant Virus Research Studies
- Type
- article
- Field-Weighted Citation Impact
- 2.40
Funders
- Bundesministerium für Bildung und Forschung
- RWTH Aachen University