In Vitro Antibacterial Activity, Molecular Docking, and ADMET Analysis of Phytochemicals from Roots of Dovyalis abyssinica

<i>Dovyalis abyssinica</i> is widely used in Ethiopia for treating various human ailments, yet its pharmacological properties and chemical composition remain largely unexplored. The chromatographic separation of <i>D. abyssinica</i> roots extract afforded five compounds, namely tremulacin (<b>1</b>), cochinchiside A (<b>2</b>), 5-methoxydurmillone (<b>3</b>), catechin-7-<i>O</i>-α-L-rhamnopyranoside (<b>4</b>), and stigmasterol (<b>5</b>), confirmed via IR, NMR, and MS spectral data. This is the first report of these compounds from this plant, except for compounds <b>1</b> and <b>5</b>. The extracts and isolated compounds were tested for antibacterial activity against <i>S. aureus</i>, <i>S. epidermidis</i>, <i>E. faecalis</i>, <i>E. coli</i>, <i>K. pneumoniae</i>, and <i>P. aeruginosa</i> strains. Methanol roots extract exhibited significant antibacterial activity (MIC 0.195 mg/mL) against <i>E. coli</i> and <i>P. aeruginosa</i>. Compounds <b>1</b> and <b>3</b> showed remarkable antibacterial activity, with compound <b>1</b> (MIC 0.625 mg/mL) exhibiting antibacterial activity against <i>S. aureus</i> and <i>S. epidermidis</i>, whereas compound <b>3</b> (MIC 0.625 mg/mL) exhibited antibacterial activity against <i>S. epidermidis</i> and <i>K. pneumoniae</i>. Molecular docking analysis revealed better binding energies for compound <b>1</b> (-8.0, -9.7, and -8.0 kJ/mol) and compound <b>3</b> (-9.0, -8.7, and -8.4 kJ/mol), compared to ciprofloxacin (-8.3, -7.5, and -6.7 kJ/mol), in regard to <i>S. aureus</i> pyruvate kinase, <i>S. epidermidis</i> FtsZ, and <i>K. pneumoniae</i> Topoisomerase IV, respectively. ADME analysis also revealed good antibacterial candidacy of these compounds, provided that in vivo analysis is conducted for further confirmation of the results.

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Journal
Molecules
Published
2024-11-27
DOI
https://doi.org/10.3390/molecules29235608
Citations
6
Primary Topic
Ethnobotanical and Medicinal Plants Studies
Type
article
Field-Weighted Citation Impact
3.60

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article

In Vitro Antibacterial Activity, Molecular Docking, and ADMET Analysis of Phytochemicals from Roots of Dovyalis abyssinica

Negera Abdissa, Milkyas Endale, Frehiwot Teka Assamo, Messay Wolde‐Mariam et al.
6 citations
Molecules
Ethnobotanical and Medicinal Plants Studies
3.60
article

In Vitro Antibacterial Activity, Molecular Docking, and ADMET Analysis of Phytochemicals from Roots of Dovyalis abyssinica

Negera Abdissa, Milkyas Endale, Frehiwot Teka Assamo, Messay Wolde‐Mariam, Norbert Sewald, Marcel Frese, Asfaw Meressa, Abiy Abebe, Temesgen Negassa, Dereilo Bekere Belitibo, Temesgen Abdisa Ayana
article en
6 citations

Abstract

<i>Dovyalis abyssinica</i> is widely used in Ethiopia for treating various human ailments, yet its pharmacological properties and chemical composition remain largely unexplored. The chromatographic separation of <i>D. abyssinica</i> roots extract afforded five compounds, namely tremulacin (<b>1</b>), cochinchiside A (<b>2</b>), 5-methoxydurmillone (<b>3</b>), catechin-7-<i>O</i>-α-L-rhamnopyranoside (<b>4</b>), and stigmasterol (<b>5</b>), confirmed via IR, NMR, and MS spectral data. This is the first report of these compounds from this plant, except for compounds <b>1</b> and <b>5</b>. The extracts and isolated compounds were tested for antibacterial activity against <i>S. aureus</i>, <i>S. epidermidis</i>, <i>E. faecalis</i>, <i>E. coli</i>, <i>K. pneumoniae</i>, and <i>P. aeruginosa</i> strains. Methanol roots extract exhibited significant antibacterial activity (MIC 0.195 mg/mL) against <i>E. coli</i> and <i>P. aeruginosa</i>. Compounds <b>1</b> and <b>3</b> showed remarkable antibacterial activity, with compound <b>1</b> (MIC 0.625 mg/mL) exhibiting antibacterial activity against <i>S. aureus</i> and <i>S. epidermidis</i>, whereas compound <b>3</b> (MIC 0.625 mg/mL) exhibited antibacterial activity against <i>S. epidermidis</i> and <i>K. pneumoniae</i>. Molecular docking analysis revealed better binding energies for compound <b>1</b> (-8.0, -9.7, and -8.0 kJ/mol) and compound <b>3</b> (-9.0, -8.7, and -8.4 kJ/mol), compared to ciprofloxacin (-8.3, -7.5, and -6.7 kJ/mol), in regard to <i>S. aureus</i> pyruvate kinase, <i>S. epidermidis</i> FtsZ, and <i>K. pneumoniae</i> Topoisomerase IV, respectively. ADME analysis also revealed good antibacterial candidacy of these compounds, provided that in vivo analysis is conducted for further confirmation of the results.

MoleculesVol. 29(23)
Jimma University (ET), Bielefeld University (DE), Wollega University (ET), Armauer Hansen Research Institute (ET)
Alexander von Humboldt-Stiftung, Armauer Hansen Research Institute, Wollega University, Deutsche Forschungsgemeinschaft, Universität Bielefeld
Openalex Percentile: Top 7%
Ethnobotanical and Medicinal Plants Studies
3.60
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