Properties of Maxentropic DNA Synthesis Codes

Low-weight codes have been proposed for efficiently synthesizing deoxyribonucleic acid (DNA) for massive data storage, where a multiple of DNA strands are synthesized in parallel. We report on the redundancy and information rate of maxentropic low-weight codes for asymptotically large codeword length. We compare the performance of low-complexity nibble replacement (NR) codes, which are designed to minimize the synthesis time, with the performance of maxentropic low-weight codes. Finally, the asymptotic redundancy and information rate of codes with a runlength limitation are investigated.

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Publication Details

Journal
Entropy
Published
2024-11-27
DOI
https://doi.org/10.3390/e26121028
Citations
2
Primary Topic
DNA and Biological Computing
Type
article
Field-Weighted Citation Impact
0.47

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article

Properties of Maxentropic DNA Synthesis Codes

Kees A. Schouhamer Immink, Kui Cai, Jos H. Weber
2 citations
Entropy
DNA and Biological Computing
0.47
article

Properties of Maxentropic DNA Synthesis Codes

Kees A. Schouhamer Immink, Kui Cai, Jos H. Weber
article en
2 citations

Abstract

Low-weight codes have been proposed for efficiently synthesizing deoxyribonucleic acid (DNA) for massive data storage, where a multiple of DNA strands are synthesized in parallel. We report on the redundancy and information rate of maxentropic low-weight codes for asymptotically large codeword length. We compare the performance of low-complexity nibble replacement (NR) codes, which are designed to minimize the synthesis time, with the performance of maxentropic low-weight codes. Finally, the asymptotic redundancy and information rate of codes with a runlength limitation are investigated.

EntropyVol. 26(12)
Singapore University of Technology and Design (SG), Delft University of Technology (NL)
Singapore University of Technology and Design
Openalex Percentile: Top 34%
DNA and Biological Computing
0.47
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