TensorFit: an open-source tool for fast MRS metabolite quantification.

Motivation: Addressing the time constraints in Magnetic Resonance Spectroscopy (MRS) metabolite quantification, TensorFit aims to overcome processing delays hindering clinical use. Goal(s): TensorFit seeks to accelerate MRS analysis with a strong focus in time efficiency, using GPU acceleration, and modeling capabilities within the Torch framework. Approach: Implemented in Python, employs Torch for efficient forward- and back-propagation, allowing rapid quantification of large datasets. It supports GPU usage, and integration with SpectrIm-QMRS for clinical practices. Results: TensorFit achieves speed-ups surpassing existing methods by up to 200x on GPU and 17x on CPU, making it a powerful tool for metabolite quantification in EPSI data. Impact: TensorFit speed-up MRS metabolite quantification in clinical practices, enabling ultra-fast analysis. This tool could lead to enhance the use of high-resolution MRS adquisition for both research and clinical practices.

Authors

Publication Details

Journal
Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Published
2024-11-26
DOI
https://doi.org/10.58530/2024/0251
Primary Topic
Metabolomics and Mass Spectrometry Studies
Type
article
Field-Weighted Citation Impact
0.00
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article

TensorFit: an open-source tool for fast MRS metabolite quantification.

Johannes Slotboom, Federico Turco
Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Metabolomics and Mass Spectrometry Studies
article

TensorFit: an open-source tool for fast MRS metabolite quantification.

Johannes Slotboom, Federico Turco
article en

Abstract

Motivation: Addressing the time constraints in Magnetic Resonance Spectroscopy (MRS) metabolite quantification, TensorFit aims to overcome processing delays hindering clinical use. Goal(s): TensorFit seeks to accelerate MRS analysis with a strong focus in time efficiency, using GPU acceleration, and modeling capabilities within the Torch framework. Approach: Implemented in Python, employs Torch for efficient forward- and back-propagation, allowing rapid quantification of large datasets. It supports GPU usage, and integration with SpectrIm-QMRS for clinical practices. Results: TensorFit achieves speed-ups surpassing existing methods by up to 200x on GPU and 17x on CPU, making it a powerful tool for metabolite quantification in EPSI data. Impact: TensorFit speed-up MRS metabolite quantification in clinical practices, enabling ultra-fast analysis. This tool could lead to enhance the use of high-resolution MRS adquisition for both research and clinical practices.

Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Openalex Percentile: Top 81%
Metabolomics and Mass Spectrometry Studies
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