Quantitative determination of the spatial distribution of components in single cells with CellDetail

The distribution of biomolecules within cells changes upon aging and diseases. To quantitatively determine the spatial distribution of components inside cells, we built the user-friendly open-source 3D-cell-image analysis platform Cell Detection and Analysis of Intensity Lounge (CellDetail). The algorithm within CellDetail is based on the concept of the dipole moment. CellDetail provides quantitative values for the distribution of the polarity proteins Cdc42 and Tubulin in young and aged hematopoietic stem cells (HSCs). Septin proteins form networks within cells that are critical for cell compartmentalization. We uncover a reduced level of organization of the Septin network within aged HSCs and within senescent human fibroblasts. Changes in the Septin network structure might therefore be a common feature of aging. The level of organization of the network of Septin proteins in aged HSCs can be restored to a youthful level by pharmacological attenuation of the activity of the small RhoGTPase Cdc42.

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Publication Details

Journal
Nature Communications
Published
2024-11-26
DOI
https://doi.org/10.1038/s41467-024-54638-8
Citations
5
Primary Topic
Fungal and yeast genetics research
Type
article
Field-Weighted Citation Impact
1.17

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Quantitative determination of the spatial distribution of components in single cells with CellDetail

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5 citations
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Fungal and yeast genetics research
1.17
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Quantitative determination of the spatial distribution of components in single cells with CellDetail

Karin Soller, Hartmut Geiger, Meinhard Wlaschek, Medhanie Mulaw, Tanja Schuster, Karin Scharffetter‐­Kochanek, Angelika Vollmer, Julian Niemann, Mona Vogel, Amanda Amoah, Gina Marka, Vadim Sakk, Mehmet Saçma, Ani Grigoryan
article en
5 citations

Abstract

The distribution of biomolecules within cells changes upon aging and diseases. To quantitatively determine the spatial distribution of components inside cells, we built the user-friendly open-source 3D-cell-image analysis platform Cell Detection and Analysis of Intensity Lounge (CellDetail). The algorithm within CellDetail is based on the concept of the dipole moment. CellDetail provides quantitative values for the distribution of the polarity proteins Cdc42 and Tubulin in young and aged hematopoietic stem cells (HSCs). Septin proteins form networks within cells that are critical for cell compartmentalization. We uncover a reduced level of organization of the Septin network within aged HSCs and within senescent human fibroblasts. Changes in the Septin network structure might therefore be a common feature of aging. The level of organization of the network of Septin proteins in aged HSCs can be restored to a youthful level by pharmacological attenuation of the activity of the small RhoGTPase Cdc42.

Nature CommunicationsVol. 15(1)
Universität Ulm (DE), Terry Fox Research Institute (CA), Technische Hochschule Ulm (DE)
Deutsche Forschungsgemeinschaft, Technische Universität Dresden, Universität Ulm
Openalex Percentile: Top 21%
Fungal and yeast genetics research
1.17
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