Zero-Shot lung segmentation of Phase-Resolved Functional Lung (PREFUL) MRI from adults and children with pulmonary diseases

Motivation: PREFUL MRI relies on accurate lung segmentation. Automating lung segmentation using supervised machine learning requires the laborious creation of training data. Therefore, an alternative independent of availability and peculiarities of training data may be useful. Goal(s): Investigate feasibility and limits of lung segmentation in PREFUL MRI across different vendors, acquisition parameters, age groups and pulmonary diseases without training data. Approach: Segment Anything Model (SAM) using different point grids and seedpoint-based prompts was evaluated in overall 14 different configurations. Results: Comparison with ground truth showed median Dice Similarity Coefficient (DSC) of 0.82 without training data. Impact: Lung segmentation of PREFUL MRI of child and adult patients with different pulmonary diseases appears feasible without training data. The construction of supervised trained segmentation models may be not mandatory for projects when a median DSC of 0.82 is sufficient.

Authors

Publication Details

Journal
Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Published
2024-11-26
DOI
https://doi.org/10.58530/2024/1993
Primary Topic
Atomic and Subatomic Physics Research
Type
article
Field-Weighted Citation Impact
0.00
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article

Zero-Shot lung segmentation of Phase-Resolved Functional Lung (PREFUL) MRI from adults and children with pulmonary diseases

Marius Wernz, Filip Klimeš, Andreas Voskrebenzev, Maximilian Zubke et al.
Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Atomic and Subatomic Physics Research
article

Zero-Shot lung segmentation of Phase-Resolved Functional Lung (PREFUL) MRI from adults and children with pulmonary diseases

Marius Wernz, Filip Klimeš, Andreas Voskrebenzev, Maximilian Zubke, Frank Wacker, Milan Speth, Robin Mueller, Jens Vogel‐Claussen
article en

Abstract

Motivation: PREFUL MRI relies on accurate lung segmentation. Automating lung segmentation using supervised machine learning requires the laborious creation of training data. Therefore, an alternative independent of availability and peculiarities of training data may be useful. Goal(s): Investigate feasibility and limits of lung segmentation in PREFUL MRI across different vendors, acquisition parameters, age groups and pulmonary diseases without training data. Approach: Segment Anything Model (SAM) using different point grids and seedpoint-based prompts was evaluated in overall 14 different configurations. Results: Comparison with ground truth showed median Dice Similarity Coefficient (DSC) of 0.82 without training data. Impact: Lung segmentation of PREFUL MRI of child and adult patients with different pulmonary diseases appears feasible without training data. The construction of supervised trained segmentation models may be not mandatory for projects when a median DSC of 0.82 is sufficient.

Proceedings on CD-ROM - International Society for Magnetic Resonance in Medicine. Scientific Meeting and Exhibition/Proceedings of the International Society for Magnetic Resonance in Medicine, Scientific Meeting and Exhibition
Openalex Percentile: Top 81%
Atomic and Subatomic Physics Research
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