STRprofiler: efficient comparisons of short tandem repeat profiles for biomedical model authentication
STRprofiler is freely available as a Python package with a rich CLI from PyPI https://pypi.org/project/strprofiler/ with source code available under the MIT license on GitHub https://github.com/j-andrews7/strprofiler and at https://zenodo.org/records/10989034. A web server hosting an example STRprofiler Shiny application backed by a database with data from the National Cancer Institute-funded PDXNet consortium and The Jackson Laboratory PDX program is available at https://sj-bakerlab.shinyapps.io/strprofiler/. Full documentation is available at https://strprofiler.readthedocs.io/en/latest/.
Authors
- Suzanne J. Baker (ORCID: https://orcid.org/0000-0002-5833-472X)
- Emily L. Jocoy (ORCID: https://orcid.org/0000-0002-1583-8020)
- Carol J. Bult (ORCID: https://orcid.org/0000-0001-9433-210X)
- Michael W. Lloyd (ORCID: https://orcid.org/0000-0003-1021-8129)
- Margaret Bundy (ORCID: https://orcid.org/0000-0003-1030-4828)
- Yvonne A. Evrard (ORCID: https://orcid.org/0000-0002-3475-4850)
- Jared Andrews (ORCID: https://orcid.org/0000-0002-0780-6248)
- Susan Airhart (ORCID: https://orcid.org/0000-0001-7040-1238)
- Jeffrey H. Chuang (ORCID: https://orcid.org/0000-0002-3298-2358)
- Steven B. Neuhauser (ORCID: https://orcid.org/0000-0002-2993-9324)
Institutions
- Leidos (United States) (US)
- St. Jude Children's Research Hospital (US)
- Jackson Laboratory (US)
- Frederick National Laboratory for Cancer Research (US)
Publication Details
- Journal
- Bioinformatics
- Published
- 2024-11-26
- DOI
- https://doi.org/10.1093/bioinformatics/btae713
- Citations
- 1
- Primary Topic
- Molecular Biology Techniques and Applications
- Type
- article
- Field-Weighted Citation Impact
- 0.23
Funders
- U.S. Department of Health and Human Services
- National Institutes of Health
- National Cancer Institute